Zm00001e017245_P001 (Zm00001e017245)

Aliases : Zm00001e017245

Description : component RPA3 of single-stranded-DNA binding RPA complex. component RPA3 of RPA presynaptic filament assembly factor complex

Gene families : OG0005363 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005363_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e017245_P001

Target	Alias	Description	ECC score	Gene Family Method
AT4G18590	No alias	Nucleic acid-binding, OB-fold-like protein	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000718.65	No alias	Cell cycle.mitosis and meiosis.meiotic recombination.DNA...	0.02	OrthoFinder output from all 47 species
Dac_g30117	No alias	component *(RPA3) of RPA presynaptic filament assembly...	0.02	OrthoFinder output from all 47 species
GSVIVT01000981001	No alias	Cell cycle.mitosis and meiosis.meiotic recombination.DNA...	0.02	OrthoFinder output from all 47 species
MA_10430633g0010	No alias	component RPA3 of single-stranded-DNA binding RPA...	0.03	OrthoFinder output from all 47 species
Mp8g07790.1	No alias	component RPA3 of single-stranded-DNA binding RPA...	0.03	OrthoFinder output from all 47 species
Pp3c2_28010V3.1	Pp3c2_28010	Nucleic acid-binding, OB-fold-like protein	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006260	DNA replication	IEA	Interproscan
BP	GO:0006281	DNA repair	IEA	Interproscan
BP	GO:0006310	DNA recombination	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	HCCA
MF	GO:0003697	single-stranded DNA binding	IEP	HCCA
BP	GO:0006952	defense response	IEP	HCCA
MF	GO:0008170	N-methyltransferase activity	IEP	HCCA
MF	GO:0008276	protein methyltransferase activity	IEP	HCCA
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
MF	GO:0009982	pseudouridine synthase activity	IEP	HCCA
MF	GO:0016278	lysine N-methyltransferase activity	IEP	HCCA
MF	GO:0016279	protein-lysine N-methyltransferase activity	IEP	HCCA
MF	GO:0016866	intramolecular transferase activity	IEP	HCCA
MF	GO:0018024	histone lysine N-methyltransferase activity	IEP	HCCA
MF	GO:0042054	histone methyltransferase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR013970	Rfa2	1	105

External Links

No external refs found!

Zm00001e017245_P001 (Zm00001e017245)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation