Aliases : Zm00001e017143
Description : RUB ligase E3 protein (RBX1). UBQ-E2-recruiting component RBX1 of SKP1-CUL1-FBX (SCF) E3 ligase complexes
Gene families : OG0002121 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002121_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Zm00001e017143_P001 | |
Cluster | HCCA: Cluster_21 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00024p00244120 | HRT1, ATRBX1,... | Protein degradation.peptide tagging.Related-to-Ubiquitin... | 0.04 | OrthoFinder output from all 47 species | |
Ceric.19G058300.1 | Ceric.19G058300 | core component *(RBX1) of CULLIN-based E3 ubiquitin... | 0.05 | OrthoFinder output from all 47 species | |
Cre12.g543450 | No alias | Protein degradation.peptide tagging.Related-to-Ubiquitin... | 0.04 | OrthoFinder output from all 47 species | |
Cre13.g590900 | No alias | Protein degradation.peptide tagging.Ubiquitin... | 0.03 | OrthoFinder output from all 47 species | |
Dcu_g49763 | No alias | core component *(RBX1) of CULLIN-based E3 ubiquitin... | 0.02 | OrthoFinder output from all 47 species | |
GSVIVT01015070001 | No alias | Protein degradation.peptide tagging.Related-to-Ubiquitin... | 0.04 | OrthoFinder output from all 47 species | |
LOC_Os02g47870.1 | LOC_Os02g47870 | RUB ligase E3 protein (RBX1). UBQ-E2-recruiting... | 0.05 | OrthoFinder output from all 47 species | |
Solyc12g009120.2.1 | HRT1, ATRBX1,... | RUB ligase E3 protein (RBX1). UBQ-E2-recruiting... | 0.03 | OrthoFinder output from all 47 species | |
Spa_g17821 | HRT1, ATRBX1, RBX1, ROC1 | core component *(RBX1) of CULLIN-based E3 ubiquitin... | 0.04 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008270 | zinc ion binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0000786 | nucleosome | IEP | HCCA |
MF | GO:0004175 | endopeptidase activity | IEP | HCCA |
MF | GO:0004298 | threonine-type endopeptidase activity | IEP | HCCA |
CC | GO:0005575 | cellular_component | IEP | HCCA |
CC | GO:0005839 | proteasome core complex | IEP | HCCA |
BP | GO:0006396 | RNA processing | IEP | HCCA |
BP | GO:0006511 | ubiquitin-dependent protein catabolic process | IEP | HCCA |
BP | GO:0008380 | RNA splicing | IEP | HCCA |
BP | GO:0009056 | catabolic process | IEP | HCCA |
BP | GO:0009057 | macromolecule catabolic process | IEP | HCCA |
CC | GO:0019773 | proteasome core complex, alpha-subunit complex | IEP | HCCA |
BP | GO:0019941 | modification-dependent protein catabolic process | IEP | HCCA |
CC | GO:0032991 | protein-containing complex | IEP | HCCA |
CC | GO:0032993 | protein-DNA complex | IEP | HCCA |
CC | GO:0035145 | exon-exon junction complex | IEP | HCCA |
BP | GO:0043632 | modification-dependent macromolecule catabolic process | IEP | HCCA |
BP | GO:0044248 | cellular catabolic process | IEP | HCCA |
BP | GO:0044265 | cellular macromolecule catabolic process | IEP | HCCA |
CC | GO:0044815 | DNA packaging complex | IEP | HCCA |
BP | GO:0051603 | proteolysis involved in protein catabolic process | IEP | HCCA |
MF | GO:0070003 | threonine-type peptidase activity | IEP | HCCA |
CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
CC | GO:0140535 | intracellular protein-containing complex | IEP | HCCA |
BP | GO:1901575 | organic substance catabolic process | IEP | HCCA |
CC | GO:1902494 | catalytic complex | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR024766 | Znf_RING_H2 | 54 | 112 |
No external refs found! |