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  5. Zm00001e016824_P001

Zm00001e016824_P001 (TAF15b, Zm00001e016824)


Aliases : TAF15b, Zm00001e016824

Description : Transcription initiation factor TFIID subunit 15b OS=Arabidopsis thaliana (sp|q94kd0|ta15b_arath : 151.0)


Gene families : OG0003283 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003283_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e016824_P001
Cluster HCCA: Cluster_170

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00153p00073330 TAF15b,... Transcription initiation factor TFIID subunit 15b... 0.04 OrthoFinder output from all 47 species
AT5G58470 TAF15b TBP-associated factor 15B 0.06 OrthoFinder output from all 47 species
Aob_g03332 TAF15b not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g13937 TAF15b not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g07541 TAF15b not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.19G014000.1 TAF15b, Ceric.19G014000 not classified & original description: pacid=50575256... 0.03 OrthoFinder output from all 47 species
Dcu_g12088 TAF15b not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g07003 TAF15b not classified & original description: none 0.04 OrthoFinder output from all 47 species
Gb_25472 TAF15b no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os01g07070.2 TAF15b, LOC_Os01g07070 Transcription initiation factor TFIID subunit 15b... 0.06 OrthoFinder output from all 47 species
MA_10427252g0010 TAF15b Transcription initiation factor TFIID subunit 15b... 0.04 OrthoFinder output from all 47 species
Pir_g06028 TAF15b not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g11171 TAF15b not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g11892 TAF15b not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc06g082220.4.1 TAF15b, Solyc06g082220 Transcription initiation factor TFIID subunit 15b... 0.07 OrthoFinder output from all 47 species
Spa_g22431 TAF15b not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR001876 Znf_RanBP2 96 126
IPR000504 RRM_dom 355 384
No external refs found!