Aliases : MSH7, ATMSH7, MSH6-2, Zm00001e016678
Description : component MSH7 of MSH2-x mismatch repair heterodimers
Gene families : OG0001663 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001663_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Zm00001e016678_P004 | |
Cluster | HCCA: Cluster_15 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00003p00029910 | MSH6-1, ATMSH6,... | DNA damage response.DNA repair mechanisms.mismatch... | 0.02 | OrthoFinder output from all 47 species | |
AMTR_s00006p00242090 | MSH7, ATMSH7,... | DNA mismatch repair protein MSH7 OS=Arabidopsis thaliana | 0.17 | OrthoFinder output from all 47 species | |
AMTR_s00022p00172100 | MSH7, ATMSH7,... | DNA mismatch repair protein MSH7 OS=Arabidopsis thaliana | 0.04 | OrthoFinder output from all 47 species | |
AMTR_s00078p00191830 | MSH7, ATMSH7,... | DNA damage response.DNA repair mechanisms.mismatch... | 0.12 | OrthoFinder output from all 47 species | |
AT3G24495 | MSH7, ATMSH7, MSH6-2 | MUTS homolog 7 | 0.17 | OrthoFinder output from all 47 species | |
Azfi_s0015.g014037 | MSH7, ATMSH7, MSH6-2 | component *(MSH7) of MSH2-x mismatch repair heterodimers... | 0.11 | OrthoFinder output from all 47 species | |
Azfi_s0368.g067032 | MSH6-1, ATMSH6, MSH6 | component *(MSH6) of MSH2-x mismatch repair heterodimers... | 0.05 | OrthoFinder output from all 47 species | |
Ceric.09G018600.1 | MSH6-1, ATMSH6,... | component *(MSH6) of MSH2-x mismatch repair heterodimers... | 0.03 | OrthoFinder output from all 47 species | |
Cre05.g235750 | MSH6-1, ATMSH6, MSH6 | DNA mismatch repair protein MSH6 OS=Arabidopsis thaliana | 0.09 | OrthoFinder output from all 47 species | |
Dac_g23796 | MSH7, ATMSH7, MSH6-2 | component *(MSH7) of MSH2-x mismatch repair heterodimers... | 0.04 | OrthoFinder output from all 47 species | |
Dcu_g46455 | MSH7, ATMSH7, MSH6-2 | component *(MSH7) of MSH2-x mismatch repair heterodimers... | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01015407001 | MSH7, ATMSH7, MSH6-2 | DNA damage response.DNA repair mechanisms.mismatch... | 0.14 | OrthoFinder output from all 47 species | |
GSVIVT01028112001 | MSH6-1, ATMSH6, MSH6 | DNA damage response.DNA repair mechanisms.mismatch... | 0.06 | OrthoFinder output from all 47 species | |
Gb_07613 | MSH6-1, ATMSH6, MSH6 | component MSH6 of MSH2-x mismatch repair heterodimers | 0.02 | OrthoFinder output from all 47 species | |
Gb_18995 | MSH7, ATMSH7, MSH6-2 | DNA mismatch repair protein MSH7 OS=Arabidopsis thaliana... | 0.04 | OrthoFinder output from all 47 species | |
Gb_18996 | MSH7, ATMSH7, MSH6-2 | DNA mismatch repair protein MSH7 OS=Arabidopsis thaliana... | 0.02 | OrthoFinder output from all 47 species | |
LOC_Os01g08540.1 | MSH7, ATMSH7,... | component MSH7 of MSH2-x mismatch repair heterodimers | 0.07 | OrthoFinder output from all 47 species | |
LOC_Os09g24220.1 | MSH6-1, ATMSH6,... | component MSH6 of MSH2-x mismatch repair heterodimers | 0.09 | OrthoFinder output from all 47 species | |
MA_117644g0010 | MSH7, ATMSH7, MSH6-2 | DNA mismatch repair protein MSH7 OS=Arabidopsis thaliana... | 0.02 | OrthoFinder output from all 47 species | |
MA_214705g0010 | MSH7, ATMSH7, MSH6-2 | DNA mismatch repair protein MSH7 OS=Arabidopsis thaliana... | 0.06 | OrthoFinder output from all 47 species | |
Mp2g14640.1 | MSH6-1, ATMSH6, MSH6 | component MSH6 of MSH2-x mismatch repair heterodimers | 0.03 | OrthoFinder output from all 47 species | |
Mp7g16850.1 | MSH7, ATMSH7, MSH6-2 | component MSH7 of MSH2-x mismatch repair heterodimers | 0.19 | OrthoFinder output from all 47 species | |
Sam_g16226 | No alias | component *(MSH7) of MSH2-x mismatch repair heterodimers... | 0.02 | OrthoFinder output from all 47 species | |
Solyc01g079520.3.1 | MSH6-1, ATMSH6,... | component MSH6 of MSH2-x mismatch repair heterodimers | 0.13 | OrthoFinder output from all 47 species | |
Tin_g08443 | MSH7, ATMSH7, MSH6-2 | component *(MSH7) of MSH2-x mismatch repair heterodimers... | 0.04 | OrthoFinder output from all 47 species | |
Tin_g15143 | MSH6-1, ATMSH6, MSH6 | component *(MSH6) of MSH2-x mismatch repair heterodimers... | 0.02 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0005524 | ATP binding | IEA | Interproscan |
BP | GO:0006298 | mismatch repair | IEA | Interproscan |
MF | GO:0030983 | mismatched DNA binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0000151 | ubiquitin ligase complex | IEP | HCCA |
CC | GO:0000152 | nuclear ubiquitin ligase complex | IEP | HCCA |
MF | GO:0003682 | chromatin binding | IEP | HCCA |
MF | GO:0003774 | cytoskeletal motor activity | IEP | HCCA |
MF | GO:0003777 | microtubule motor activity | IEP | HCCA |
MF | GO:0003887 | DNA-directed DNA polymerase activity | IEP | HCCA |
MF | GO:0005515 | protein binding | IEP | HCCA |
CC | GO:0005680 | anaphase-promoting complex | IEP | HCCA |
BP | GO:0006260 | DNA replication | IEP | HCCA |
BP | GO:0006270 | DNA replication initiation | IEP | HCCA |
BP | GO:0007017 | microtubule-based process | IEP | HCCA |
BP | GO:0007018 | microtubule-based movement | IEP | HCCA |
MF | GO:0008017 | microtubule binding | IEP | HCCA |
MF | GO:0008092 | cytoskeletal protein binding | IEP | HCCA |
BP | GO:0010639 | negative regulation of organelle organization | IEP | HCCA |
MF | GO:0015631 | tubulin binding | IEP | HCCA |
CC | GO:0031461 | cullin-RING ubiquitin ligase complex | IEP | HCCA |
BP | GO:0032780 | negative regulation of ATP-dependent activity | IEP | HCCA |
CC | GO:0032991 | protein-containing complex | IEP | HCCA |
BP | GO:0033043 | regulation of organelle organization | IEP | HCCA |
BP | GO:0033044 | regulation of chromosome organization | IEP | HCCA |
MF | GO:0034061 | DNA polymerase activity | IEP | HCCA |
CC | GO:0042555 | MCM complex | IEP | HCCA |
BP | GO:0043086 | negative regulation of catalytic activity | IEP | HCCA |
BP | GO:0043462 | regulation of ATP-dependent activity | IEP | HCCA |
BP | GO:0044092 | negative regulation of molecular function | IEP | HCCA |
BP | GO:0048519 | negative regulation of biological process | IEP | HCCA |
BP | GO:0048523 | negative regulation of cellular process | IEP | HCCA |
BP | GO:0050790 | regulation of catalytic activity | IEP | HCCA |
BP | GO:0051095 | regulation of helicase activity | IEP | HCCA |
BP | GO:0051097 | negative regulation of helicase activity | IEP | HCCA |
BP | GO:0051128 | regulation of cellular component organization | IEP | HCCA |
BP | GO:0051129 | negative regulation of cellular component organization | IEP | HCCA |
BP | GO:0065009 | regulation of molecular function | IEP | HCCA |
MF | GO:0140097 | catalytic activity, acting on DNA | IEP | HCCA |
CC | GO:0140535 | intracellular protein-containing complex | IEP | HCCA |
MF | GO:0140657 | ATP-dependent activity | IEP | HCCA |
BP | GO:1905462 | regulation of DNA duplex unwinding | IEP | HCCA |
BP | GO:1905463 | negative regulation of DNA duplex unwinding | IEP | HCCA |
BP | GO:1905774 | regulation of DNA helicase activity | IEP | HCCA |
BP | GO:1905775 | negative regulation of DNA helicase activity | IEP | HCCA |
CC | GO:1990234 | transferase complex | IEP | HCCA |
BP | GO:2001251 | negative regulation of chromosome organization | IEP | HCCA |
No external refs found! |