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  5. Zm00001e016398_P001

Zm00001e016398_P001 (Zm00001e016398)


Aliases : Zm00001e016398

Description : ubiquitin E3 ligase (CERBERUS/LIN)


Gene families : OG0002525 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002525_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e016398_P001
Cluster HCCA: Cluster_354

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00231470 evm_27.TU.AmTr_v1... Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus 0.02 OrthoFinder output from all 47 species
Adi_g001214 No alias ubiquitin E3 ligase *(CERBERUS/LIN) & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g21868 No alias ubiquitin E3 ligase *(CERBERUS/LIN) & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os02g07190.1 LOC_Os02g07190 Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus... 0.04 OrthoFinder output from all 47 species
LOC_Os05g30010.1 LOC_Os05g30010 Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus... 0.02 OrthoFinder output from all 47 species
MA_1171557g0010 No alias ubiquitin E3 ligase (CERBERUS/LIN) 0.05 OrthoFinder output from all 47 species
MA_15009g0010 PUB26 Putative E3 ubiquitin-protein ligase LIN-2 OS=Lotus... 0.06 OrthoFinder output from all 47 species
MA_7506947g0010 No alias Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus... 0.02 OrthoFinder output from all 47 species
Msp_g15480 No alias ubiquitin E3 ligase *(CERBERUS/LIN) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g32668 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g19454 No alias ubiquitin E3 ligase *(CERBERUS/LIN) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g49606 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g006380.2.1 Solyc01g006380 Putative E3 ubiquitin-protein ligase LIN OS=Medicago... 0.03 OrthoFinder output from all 47 species
Solyc07g020870.3.1 PUB26, Solyc07g020870 ubiquitin E3 ligase (CERBERUS/LIN) 0.03 OrthoFinder output from all 47 species
Zm00001e013722_P001 Zm00001e013722 Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR003613 Ubox_domain 230 301
IPR001680 WD40_repeat 928 957
No external refs found!