Zm00001e016366_P002 (ARF11, Zm00001e016366)


Aliases : ARF11, Zm00001e016366

Description : transcription factor (ARF)


Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e016366_P002

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00157690 ARF6,... RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
AT5G37020 ARF8, ATARF8 auxin response factor 8 0.03 OrthoFinder output from all 47 species
AT5G60450 ARF4 auxin response factor 4 0.02 OrthoFinder output from all 47 species
Adi_g024483 ARF19, IAA22, ARF11 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g054964 ARF16 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g068596 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g11824 ARF6 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g26950 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g14726 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g33060 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g33091 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g22072 ARF16 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g24155 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g21442 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene38983.t1 ARF16, Aspi01Gene38983 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene61150.t1 ARF16, Aspi01Gene61150 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0038.g026103 ARF6 ARF-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Azfi_s0065.g035933 ARF6 not classified & original description: CDS=1-678 0.02 OrthoFinder output from all 47 species
Azfi_s0384.g067487 ARF8, ATARF8 ARF-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Cba_g09882 ARF1 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g78264 ARF16 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.20G087500.1 ARF1, Ceric.20G087500 ARF-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Dac_g07132 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g16914 ARF10 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g16977 ARF6 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g20944 ARF16 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g22423 ARF6 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g43864 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g11626 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g11966 ARF10 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01004942001 HSS, ARF1-BP, ARF2, ORE14 RNA biosynthesis.transcriptional activation.B3... 0.02 OrthoFinder output from all 47 species
GSVIVT01011008001 HSS, ARF1-BP, ARF2, ORE14 RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
GSVIVT01020805001 ARF6 RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
GSVIVT01021552001 ARF6 RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
GSVIVT01032251001 ARF19, IAA22, ARF11 RNA biosynthesis.transcriptional activation.B3... 0.04 OrthoFinder output from all 47 species
GSVIVT01037136001 ARF1 RNA biosynthesis.transcriptional activation.B3... 0.02 OrthoFinder output from all 47 species
Gb_31132 ARF4 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
LOC_Os01g48060.1 ARF3, ETT, LOC_Os01g48060 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
LOC_Os02g06910.1 ARF6, LOC_Os02g06910 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
LOC_Os04g43910.1 ARF10, LOC_Os04g43910 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
LOC_Os04g59430.1 ARF17, LOC_Os04g59430 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
LOC_Os05g48870.1 ARF3, ETT, LOC_Os05g48870 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
LOC_Os10g33940.1 ARF16, LOC_Os10g33940 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Lfl_g05750 ARF6 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g07072 ARF16 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g07404 ARF6 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g18657 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
MA_103763g0010 ARF6 Auxin response factor 6 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
MA_10432349g0010 HSS, ARF1-BP, ARF2, ORE14 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
MA_127981g0010 ARF4 Auxin response factor 4 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_55076g0010 ARF6 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Mp1g07070.1 ARF10 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Mp1g12750.1 ARF6 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Pir_g35318 ARF3, ETT ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g22826 No alias transcriptional repressor *(IAA/AUX) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g39909 No alias ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Solyc07g042260.4.1 ARF19, IAA22,... transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Solyc08g008380.4.1 ARF9, Solyc08g008380 transcription factor (ARF) 0.04 OrthoFinder output from all 47 species
Solyc08g082630.3.1 ARF9, Solyc08g082630 transcription factor (ARF) 0.04 OrthoFinder output from all 47 species
Spa_g05322 ARF8, ATARF8 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g29254 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g49441 ARF16 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g04653 ARF16 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e003229_P002 ARF6, Zm00001e003229 transcription factor (ARF) 0.05 OrthoFinder output from all 47 species
Zm00001e006577_P003 ARF8, ATARF8,... transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Zm00001e006640_P002 MP, IAA24, ARF5,... transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Zm00001e013639_P001 ARF19, IAA22,... transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Zm00001e018126_P002 ARF6, Zm00001e018126 transcription factor (ARF) 0.04 OrthoFinder output from all 47 species
Zm00001e025163_P001 ARF6, Zm00001e025163 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Zm00001e030325_P003 ARF6, Zm00001e030325 transcription factor (ARF) 0.05 OrthoFinder output from all 47 species
Zm00001e041910_P003 ARF8, ATARF8,... transcription factor (ARF) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
BP GO:0009725 response to hormone IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
BP GO:0006813 potassium ion transport IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015079 potassium ion transmembrane transporter activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071805 potassium ion transmembrane transport IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 119 219
IPR033389 AUX/IAA_dom 574 663
IPR010525 ARF_dom 245 326
No external refs found!