1. Home
  2. Species
  3. Zea mays
  4. Sequence
  5. Zm00001e016242_P002

Zm00001e016242_P002 (PUM1, APUM1, Zm00001e016242)


Aliases : PUM1, APUM1, Zm00001e016242

Description : Pumilio homolog 4 OS=Arabidopsis thaliana (sp|q9ss47|pum4_arath : 733.0)


Gene families : OG0000583 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000583_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e016242_P002

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00251030 APUM2, PUM2,... Pumilio homolog 2 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00025p00181800 PUM5, APUM5,... Pumilio homolog 5 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT2G29140 PUM3, APUM3 pumilio 3 0.03 OrthoFinder output from all 47 species
AT3G10360 APUM4, PUM4 pumilio 4 0.04 OrthoFinder output from all 47 species
AT3G20250 PUM5, APUM5 pumilio 5 0.04 OrthoFinder output from all 47 species
Adi_g017782 APUM4, PUM4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g087407 PUM1, APUM1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g18472 PUM1, APUM1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g10980 PUM1, APUM1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0239.g059655 PUM1, APUM1 not classified & original description: CDS=1-3594 0.02 OrthoFinder output from all 47 species
Azfi_s0350.g066551 PUM3, APUM3 not classified & original description: CDS=36-2801 0.03 OrthoFinder output from all 47 species
Ceric.18G068300.1 APUM2, PUM2,... not classified & original description: pacid=50621207... 0.02 OrthoFinder output from all 47 species
Gb_23280 PUM1, APUM1 Pumilio homolog 1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Gb_39566 PUM5, APUM5 Pumilio homolog 5 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
LOC_Os02g57390.1 PUM1, APUM1,... Pumilio homolog 1 OS=Arabidopsis thaliana... 0.09 OrthoFinder output from all 47 species
Lfl_g10215 APUM4, PUM4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g30615 PUM1, APUM1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g05799 APUM2, PUM2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0136.g022409 APUM2, PUM2 not classified & original description: CDS=679-3840 0.03 OrthoFinder output from all 47 species
Smo86145 APUM4, PUM4 Pumilio homolog 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Zm00001e021916_P002 APUM6, PUM6,... Pumilio homolog 5 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
MF GO:0043169 cation binding IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR012940 NABP 305 665
IPR001313 Pumilio_RNA-bd_rpt 852 882
IPR001313 Pumilio_RNA-bd_rpt 934 960
IPR001313 Pumilio_RNA-bd_rpt 668 701
IPR001313 Pumilio_RNA-bd_rpt 740 771
IPR001313 Pumilio_RNA-bd_rpt 886 917
IPR001313 Pumilio_RNA-bd_rpt 703 736
IPR001313 Pumilio_RNA-bd_rpt 776 809
IPR001313 Pumilio_RNA-bd_rpt 812 839
No external refs found!