Mp4g13780.1


Description : component UPF2 of RNA quality control Exon Junction complex


Gene families : OG_01_0003758 (Archaeplastida) Phylogenetic Tree(s): OG_01_0003758_tree ,
OG_02_0006352 (LandPlants) Phylogenetic Tree(s): OG_02_0006352_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp4g13780.1
Cluster HCCA: Cluster_78

Target Alias Description ECC score Gene Family Method Actions
Cre17.g729250 No alias RNA processing.RNA quality control Exon Junction complex... 0.02 Archaeplastida
Gb_41555 No alias component UPF2 of RNA quality control Exon Junction complex 0.03 Archaeplastida
MA_10434184g0010 No alias component UPF2 of RNA quality control Exon Junction complex 0.02 Archaeplastida
MA_10437229g0010 No alias component UPF2 of RNA quality control Exon Junction complex 0.02 Archaeplastida
Pp3c11_19990V3.1 No alias binding;RNA binding 0.04 Archaeplastida
AMTR_s00041p00123630 evm_27.TU.AmTr_v1... RNA processing.RNA quality control Exon Junction complex... 0.02 LandPlants
AT2G39260 No alias binding;RNA binding 0.01 LandPlants
Gb_41555 No alias component UPF2 of RNA quality control Exon Junction complex 0.02 LandPlants
Pp3c11_19990V3.1 No alias binding;RNA binding 0.03 LandPlants

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR003890 MIF4G-like_typ-3 683 877
IPR003890 MIF4G-like_typ-3 55 205
IPR003890 MIF4G-like_typ-3 481 662
IPR007193 Upf2/Nmd2_C 1013 1146
No external refs found!