Zm00001e015383_P004 (Zm00001e015383)

Aliases : Zm00001e015383

Description : tRNA pseudouridine synthase (TruA)

Gene families : OG0006025 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006025_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e015383_P004

Target	Alias	Description	ECC score	Gene Family Method
AT1G20370	No alias	Pseudouridine synthase family protein	0.04	OrthoFinder output from all 47 species
AT1G76120	No alias	Pseudouridine synthase family protein	0.06	OrthoFinder output from all 47 species
Als_g02568	No alias	EC_5.4 intramolecular transferase & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g07265	No alias	EC_5.4 intramolecular transferase & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.09G069000.1	Ceric.09G069000	EC_5.4 intramolecular transferase & original...	0.04	OrthoFinder output from all 47 species
Dcu_g10557	No alias	EC_5.4 intramolecular transferase & original description: none	0.08	OrthoFinder output from all 47 species
GSVIVT01008716001	No alias	RNA processing.RNA...	0.03	OrthoFinder output from all 47 species
Gb_06538	No alias	tRNA pseudouridine synthase (TruA)	0.03	OrthoFinder output from all 47 species
LOC_Os02g44810.1	LOC_Os02g44810	tRNA pseudouridine synthase (TruA)	0.06	OrthoFinder output from all 47 species
Mp7g06450.1	No alias	tRNA pseudouridine synthase (TruA)	0.07	OrthoFinder output from all 47 species
Spa_g17957	No alias	EC_5.4 intramolecular transferase & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g10018	No alias	EC_5.4 intramolecular transferase & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	IEA	Interproscan
MF	GO:0009982	pseudouridine synthase activity	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016853	isomerase activity	None	Extended
MF	GO:0016866	intramolecular transferase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0004518	nuclease activity	IEP	HCCA
MF	GO:0004519	endonuclease activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006606	protein import into nucleus	IEP	HCCA
BP	GO:0006913	nucleocytoplasmic transport	IEP	HCCA
MF	GO:0008234	cysteine-type peptidase activity	IEP	HCCA
MF	GO:0008270	zinc ion binding	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0033365	protein localization to organelle	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034504	protein localization to nucleus	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0051169	nuclear transport	IEP	HCCA
BP	GO:0051170	import into nucleus	IEP	HCCA
MF	GO:0061608	nuclear import signal receptor activity	IEP	HCCA
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	IEP	HCCA
BP	GO:0072594	establishment of protein localization to organelle	IEP	HCCA
CC	GO:0090730	Las1 complex	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:0140104	molecular carrier activity	IEP	HCCA
MF	GO:0140142	nucleocytoplasmic carrier activity	IEP	HCCA
CC	GO:0140535	intracellular protein-containing complex	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
CC	GO:1902555	endoribonuclease complex	IEP	HCCA
CC	GO:1902911	protein kinase complex	IEP	HCCA
CC	GO:1905348	endonuclease complex	IEP	HCCA
CC	GO:1905354	exoribonuclease complex	IEP	HCCA
CC	GO:1990234	transferase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR020097	PsdUridine_synth_TruA_a/b_dom	356	461

External Links

No external refs found!

Zm00001e015383_P004 (Zm00001e015383)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation