Zm00001e015113_P001 (Zm00001e015113)

Aliases : Zm00001e015113

Description : polynucleotide phosphorylase (PNP)

Gene families : OG0002534 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002534_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e015113_P001

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00113p00140210	evm_27.TU.AmTr_v1...	RNA processing.organelle machineries.ribonuclease...	0.07	OrthoFinder output from all 47 species
AT5G14580	No alias	polyribonucleotide nucleotidyltransferase, putative	0.17	OrthoFinder output from all 47 species
Adi_g010370	No alias	EC_2.7 transferase transferring phosphorus-containing...	0.02	OrthoFinder output from all 47 species
Als_g03851	No alias	EC_2.7 transferase transferring phosphorus-containing...	0.02	OrthoFinder output from all 47 species
Aop_g29988	No alias	EC_2.7 transferase transferring phosphorus-containing...	0.04	OrthoFinder output from all 47 species
Cba_g07917	RIF10, PNP	EC_2.7 transferase transferring phosphorus-containing...	0.02	OrthoFinder output from all 47 species
Cba_g17083	No alias	EC_2.7 transferase transferring phosphorus-containing...	0.04	OrthoFinder output from all 47 species
Ceric.25G023900.1	Ceric.25G023900	EC_2.7 transferase transferring phosphorus-containing...	0.07	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020603.85	No alias	RNA processing.organelle machineries.ribonuclease...	0.05	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020603.86	No alias	RNA processing.organelle machineries.ribonuclease...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021073.40	No alias	RNA processing.organelle machineries.ribonuclease...	0.02	OrthoFinder output from all 47 species
Cre04.g214501	RIF10, PNP	RNA processing.organelle machineries.ribonuclease...	0.02	OrthoFinder output from all 47 species
Dac_g14765	No alias	EC_2.7 transferase transferring phosphorus-containing...	0.03	OrthoFinder output from all 47 species
Dcu_g06445	No alias	EC_2.7 transferase transferring phosphorus-containing...	0.02	OrthoFinder output from all 47 species
Ehy_g04014	No alias	EC_2.7 transferase transferring phosphorus-containing...	0.02	OrthoFinder output from all 47 species
GSVIVT01032436001	No alias	RNA processing.organelle machineries.ribonuclease...	0.14	OrthoFinder output from all 47 species
Gb_20425	No alias	polynucleotide phosphorylase (PNP)	0.06	OrthoFinder output from all 47 species
Len_g45300	No alias	EC_2.7 transferase transferring phosphorus-containing...	0.02	OrthoFinder output from all 47 species
Lfl_g09484	No alias	EC_2.7 transferase transferring phosphorus-containing...	0.02	OrthoFinder output from all 47 species
MA_10427258g0020	No alias	polynucleotide phosphorylase (PNP)	0.03	OrthoFinder output from all 47 species
MA_10432723g0020	No alias	polynucleotide phosphorylase (PNP)	0.05	OrthoFinder output from all 47 species
MA_10434926g0010	No alias	Polyribonucleotide nucleotidyltransferase 2,...	0.08	OrthoFinder output from all 47 species
Mp7g12350.1	No alias	polynucleotide phosphorylase (PNP)	0.11	OrthoFinder output from all 47 species
Pnu_g07843	No alias	EC_2.7 transferase transferring phosphorus-containing...	0.02	OrthoFinder output from all 47 species
Sam_g09102	No alias	EC_2.7 transferase transferring phosphorus-containing...	0.02	OrthoFinder output from all 47 species
Smo84724	No alias	RNA processing.organelle machineries.ribonuclease...	0.09	OrthoFinder output from all 47 species
Solyc02g086600.3.1	Solyc02g086600	polynucleotide phosphorylase (PNP)	0.17	OrthoFinder output from all 47 species
Tin_g20770	No alias	EC_2.7 transferase transferring phosphorus-containing...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003883	CTP synthase activity	IEP	HCCA
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
CC	GO:0005643	nuclear pore	IEP	HCCA
CC	GO:0005730	nucleolus	IEP	HCCA
BP	GO:0006220	pyrimidine nucleotide metabolic process	IEP	HCCA
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
MF	GO:0008134	transcription factor binding	IEP	HCCA
BP	GO:0009058	biosynthetic process	IEP	HCCA
BP	GO:0009059	macromolecule biosynthetic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
MF	GO:0009982	pseudouridine synthase activity	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
MF	GO:0016866	intramolecular transferase activity	IEP	HCCA
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	HCCA
MF	GO:0017056	structural constituent of nuclear pore	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
BP	GO:0044249	cellular biosynthetic process	IEP	HCCA
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	HCCA
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	HCCA
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA
BP	GO:1901576	organic substance biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR015848	PNPase_PH_RNA-bd_bac/org-type	304	382
IPR001247	ExoRNase_PH_dom1	385	518
IPR001247	ExoRNase_PH_dom1	74	204
IPR003029	S1_domain	684	755
IPR015847	ExoRNase_PH_dom2	207	270

External Links

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Zm00001e015113_P001 (Zm00001e015113)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation