Zm00001e015094_P002 (Zm00001e015094)


Aliases : Zm00001e015094

Description : cohesin cofactor (PDS5)


Gene families : OG0000616 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000616_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e015094_P002

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00017p00192140 evm_27.TU.AmTr_v1... Cell cycle.mitosis and meiosis.sister chromatid... 0.05 OrthoFinder output from all 47 species
AMTR_s00061p00213120 evm_27.TU.AmTr_v1... Cell cycle.mitosis and meiosis.sister chromatid... 0.03 OrthoFinder output from all 47 species
AMTR_s00065p00174980 evm_27.TU.AmTr_v1... Cell cycle.mitosis and meiosis.sister chromatid... 0.06 OrthoFinder output from all 47 species
AT1G15940 No alias Tudor/PWWP/MBT superfamily protein 0.08 OrthoFinder output from all 47 species
AT1G77600 No alias ARM repeat superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G31880 No alias LOCATED IN: cytosol, chloroplast; EXPRESSED IN: 24 plant... 0.07 OrthoFinder output from all 47 species
AT5G47690 No alias binding 0.11 OrthoFinder output from all 47 species
Adi_g019469 No alias cohesin cofactor *(PDS5) & original description: none 0.08 OrthoFinder output from all 47 species
Adi_g022401 No alias cohesin cofactor *(PDS5) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g117140 No alias cohesin cofactor *(PDS5) & original description: none 0.07 OrthoFinder output from all 47 species
Aev_g06182 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g06778 No alias cohesin cofactor *(PDS5) & original description: none 0.06 OrthoFinder output from all 47 species
Aev_g18795 No alias cohesin cofactor *(PDS5) & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g32765 No alias cohesin cofactor *(PDS5) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g11522 No alias cohesin cofactor *(PDS5) & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g20243 No alias cohesin cofactor *(PDS5) & original description: none 0.07 OrthoFinder output from all 47 species
Als_g03900 No alias cohesin cofactor *(PDS5) & original description: none 0.05 OrthoFinder output from all 47 species
Als_g62298 No alias cohesin cofactor *(PDS5) & original description: none 0.07 OrthoFinder output from all 47 species
Aob_g07435 No alias cohesin cofactor *(PDS5) & original description: none 0.08 OrthoFinder output from all 47 species
Aop_g08128 No alias cohesin cofactor *(PDS5) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g69987 No alias cohesin cofactor *(PDS5) & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene00716.t1 Aspi01Gene00716 cohesin cofactor *(PDS5) & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene04214.t1 Aspi01Gene04214 cohesin cofactor *(PDS5) & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0013.g013139 No alias cohesin cofactor *(PDS5) & original description: CDS=60-4409 0.04 OrthoFinder output from all 47 species
Azfi_s0076.g037833 No alias cohesin cofactor *(PDS5) & original description: CDS=1-5502 0.04 OrthoFinder output from all 47 species
Cba_g04527 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g18100 No alias cohesin cofactor *(PDS5) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.11G037000.1 Ceric.11G037000 cohesin cofactor *(PDS5) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.34G009800.1 Ceric.34G009800 cohesin cofactor *(PDS5) & original description:... 0.18 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000076.96 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g22018 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g29223 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g14818 No alias cohesin cofactor *(PDS5) & original description: none 0.11 OrthoFinder output from all 47 species
Dcu_g36421 No alias cohesin cofactor *(PDS5) & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g09843 No alias cohesin cofactor *(PDS5) & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g10056 No alias cohesin cofactor *(PDS5) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g02974 No alias cohesin cofactor *(PDS5) & original description: none 0.07 OrthoFinder output from all 47 species
Ehy_g14145 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g25801 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01002731001 No alias Cell cycle.mitosis and meiosis.sister chromatid... 0.04 OrthoFinder output from all 47 species
GSVIVT01002824001 No alias No description available 0.14 OrthoFinder output from all 47 species
GSVIVT01008876001 No alias Cell cycle.mitosis and meiosis.sister chromatid... 0.04 OrthoFinder output from all 47 species
GSVIVT01023587001 No alias Cell cycle.mitosis and meiosis.sister chromatid... 0.05 OrthoFinder output from all 47 species
GSVIVT01035890001 No alias Cell cycle.mitosis and meiosis.sister chromatid... 0.06 OrthoFinder output from all 47 species
Gb_02487 No alias cohesin cofactor (PDS5) 0.03 OrthoFinder output from all 47 species
Gb_23673 No alias cohesin cofactor (PDS5) 0.02 OrthoFinder output from all 47 species
LOC_Os02g39920.1 LOC_Os02g39920 cohesin cofactor (PDS5) 0.02 OrthoFinder output from all 47 species
LOC_Os06g17840.1 LOC_Os06g17840 cohesin cofactor (PDS5) 0.13 OrthoFinder output from all 47 species
Len_g21968 No alias cohesin cofactor *(PDS5) & original description: none 0.06 OrthoFinder output from all 47 species
Len_g22380 No alias cohesin cofactor *(PDS5) & original description: none 0.04 OrthoFinder output from all 47 species
Len_g46602 No alias cohesin cofactor *(PDS5) & original description: none 0.07 OrthoFinder output from all 47 species
Lfl_g09667 No alias cohesin cofactor *(PDS5) & original description: none 0.09 OrthoFinder output from all 47 species
Lfl_g10229 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
MA_10433886g0010 No alias cohesin cofactor (PDS5) 0.04 OrthoFinder output from all 47 species
MA_10434304g0010 No alias cohesin cofactor (PDS5) 0.02 OrthoFinder output from all 47 species
MA_214607g0010 No alias cohesin cofactor (PDS5) 0.02 OrthoFinder output from all 47 species
Mp3g13850.1 No alias cohesin cofactor (PDS5) 0.04 OrthoFinder output from all 47 species
Msp_g25546 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g18971 No alias cohesin cofactor *(PDS5) & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g28747 No alias cohesin cofactor *(PDS5) & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g02532 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g04827 No alias cohesin cofactor *(PDS5) & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g22700 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g44286 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g14289 No alias cohesin cofactor *(PDS5) & original description: none 0.06 OrthoFinder output from all 47 species
Pir_g16328 No alias cohesin cofactor *(PDS5) & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g20541 No alias cohesin cofactor *(PDS5) & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g36032 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g57308 No alias cohesin cofactor *(PDS5) & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g59813 No alias cohesin cofactor *(PDS5) & original description: none 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0007.g003457 No alias cohesin cofactor *(PDS5) & original description: CDS=365-5053 0.02 OrthoFinder output from all 47 species
Sam_g14013 No alias cohesin cofactor *(PDS5) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g18018 No alias cohesin cofactor *(PDS5) & original description: none 0.07 OrthoFinder output from all 47 species
Sam_g18046 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g24524 No alias cohesin cofactor *(PDS5) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g35729 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Solyc06g065710.3.1 Solyc06g065710 cohesin cofactor (PDS5) 0.1 OrthoFinder output from all 47 species
Solyc11g012770.2.1 Solyc11g012770 cohesin cofactor (PDS5) 0.11 OrthoFinder output from all 47 species
Spa_g09270 No alias cohesin cofactor *(PDS5) & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g09451 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g18111 No alias cohesin cofactor *(PDS5) & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g02194 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g11324 No alias cohesin cofactor *(PDS5) & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g20983 No alias cohesin cofactor *(PDS5) & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006476 protein deacetylation IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016575 histone deacetylation IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0035601 protein deacylation IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0098732 macromolecule deacylation IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA

No InterPro domains available for this sequence

No external refs found!