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  5. Zm00001e015082_P001

Zm00001e015082_P001 (NFD5, Zm00001e015082)


Aliases : NFD5, Zm00001e015082

Description : Pentatricopeptide repeat-containing protein At1g19525 OS=Arabidopsis thaliana (sp|q940z1|ppr51_arath : 194.0)


Gene families : OG0005460 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005460_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e015082_P001
Cluster HCCA: Cluster_71

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00011p00240280 NFD5,... Protein NUCLEAR FUSION DEFECTIVE 5, mitochondrial... 0.02 OrthoFinder output from all 47 species
AT1G19520 NFD5 pentatricopeptide (PPR) repeat-containing protein 0.11 OrthoFinder output from all 47 species
Cba_g03993 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.33G040200.1 Ceric.33G040200 not classified & original description: pacid=50607757... 0.04 OrthoFinder output from all 47 species
GSVIVT01009725001 NFD5 Protein NUCLEAR FUSION DEFECTIVE 5, mitochondrial... 0.05 OrthoFinder output from all 47 species
Gb_09266 NFD5 Pentatricopeptide repeat-containing protein At1g01970... 0.05 OrthoFinder output from all 47 species
LOC_Os02g39820.1 NFD5, LOC_Os02g39820 Pentatricopeptide repeat-containing protein At1g19525... 0.19 OrthoFinder output from all 47 species
MA_436401g0010 No alias Pentatricopeptide repeat-containing protein At1g19525... 0.06 OrthoFinder output from all 47 species
MA_82129g0010 NFD5 Protein NUCLEAR FUSION DEFECTIVE 5, mitochondrial... 0.04 OrthoFinder output from all 47 species
Msp_g14468 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g08315 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g09598 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc07g025210.2.1 NFD5, Solyc07g025210 Protein NUCLEAR FUSION DEFECTIVE 5, mitochondrial... 0.04 OrthoFinder output from all 47 species
Solyc07g025230.2.1 NFD5, Solyc07g025230 Pentatricopeptide repeat-containing protein At1g19525... 0.02 OrthoFinder output from all 47 species
Spa_g05060 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g07722 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0003724 RNA helicase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008186 ATP-dependent activity, acting on RNA IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0090730 Las1 complex IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1902555 endoribonuclease complex IEP HCCA
CC GO:1902911 protein kinase complex IEP HCCA
CC GO:1905348 endonuclease complex IEP HCCA
CC GO:1905354 exoribonuclease complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 624 649
IPR002885 Pentatricopeptide_repeat 481 507
IPR002885 Pentatricopeptide_repeat 400 455
IPR002885 Pentatricopeptide_repeat 331 374
No external refs found!