Zm00001e013992_P006 (Zm00001e013992)


Aliases : Zm00001e013992

Description : no hits & (original description: none)


Gene families : OG0001248 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001248_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e013992_P006
Cluster HCCA: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00046p00191970 evm_27.TU.AmTr_v1... No description available 0.06 OrthoFinder output from all 47 species
AT1G09880 No alias Rhamnogalacturonate lyase family protein 0.03 OrthoFinder output from all 47 species
AT4G37950 No alias Rhamnogalacturonate lyase family protein 0.02 OrthoFinder output from all 47 species
AT4G38030 No alias Rhamnogalacturonate lyase family protein 0.02 OrthoFinder output from all 47 species
Aev_g08825 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g19107 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ala_g21152 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene46069.t1 Aspi01Gene46069 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.18G076800.1 Ceric.18G076800 not classified & original description: pacid=50622194... 0.05 OrthoFinder output from all 47 species
Dcu_g18808 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01006298001 No alias No description available 0.03 OrthoFinder output from all 47 species
GSVIVT01006302001 No alias No description available 0.05 OrthoFinder output from all 47 species
GSVIVT01009215001 No alias No description available 0.02 OrthoFinder output from all 47 species
GSVIVT01012710001 No alias No description available 0.04 OrthoFinder output from all 47 species
Gb_00786 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Gb_00787 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os08g44040.1 LOC_Os08g44040 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os12g03790.1 LOC_Os12g03790 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Len_g19716 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g45652 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_228529g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_2550g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_87408g0010 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Mp2g13570.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp2g13580.1 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp5g20220.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp5g23380.1 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Mp7g11130.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Ore_g15453 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo413794 No alias No description available 0.02 OrthoFinder output from all 47 species
Smo413798 No alias No description available 0.04 OrthoFinder output from all 47 species
Solyc04g076640.3.1 Solyc04g076640 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Solyc04g076650.2.1 Solyc04g076650 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Solyc05g051350.2.1 Solyc05g051350 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Solyc11g011290.3.1 Solyc11g011290 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Solyc11g011300.2.1 Solyc11g011300 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEP HCCA
MF GO:0030247 polysaccharide binding IEP HCCA
InterPro domains Description Start Stop
IPR010325 Rhamnogal_lyase 50 247
IPR029411 RG-lyase_III 545 733
IPR029413 RG-lyase_II 455 527
No external refs found!