Zm00001e013823_P001 (Zm00001e013823)

Aliases : Zm00001e013823

Description : snRNP-associated protein (SR140)

Gene families : OG0003274 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003274_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e013823_P001

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00064p00173090	evm_27.TU.AmTr_v1...	RNA processing.RNA splicing.U2-type-intron-specific...	0.03	OrthoFinder output from all 47 species
Adi_g011558	No alias	snRNP-associated protein *(SR140) & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g059804	No alias	snRNP-associated protein *(SR140) & original description: none	0.04	OrthoFinder output from all 47 species
Ala_g02691	No alias	snRNP-associated protein *(SR140) & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g42378	No alias	snRNP-associated protein *(SR140) & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g21519	No alias	snRNP-associated protein *(SR140) & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.14G097400.1	Ceric.14G097400	snRNP-associated protein *(SR140) & original...	0.04	OrthoFinder output from all 47 species
Dcu_g04985	No alias	snRNP-associated protein *(SR140) & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g29046	No alias	snRNP-associated protein *(SR140) & original description: none	0.05	OrthoFinder output from all 47 species
GSVIVT01035985001	No alias	RNA processing.RNA splicing.U2-type-intron-specific...	0.08	OrthoFinder output from all 47 species
Gb_18824	No alias	snRNP-associated protein (SR140)	0.04	OrthoFinder output from all 47 species
Len_g31360	No alias	snRNP-associated protein *(SR140) & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g11150	No alias	snRNP-associated protein *(SR140) & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g14289	No alias	snRNP-associated protein *(SR140) & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g09321	No alias	snRNP-associated protein *(SR140) & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g02308	No alias	snRNP-associated protein *(SR140) & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g19248	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Solyc03g025280.4.1	Solyc03g025280	snRNP-associated protein (SR140)	0.09	OrthoFinder output from all 47 species
Spa_g12506	No alias	snRNP-associated protein *(SR140) & original description: none	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003682	chromatin binding	IEP	HCCA
MF	GO:0004066	asparagine synthase (glutamine-hydrolyzing) activity	IEP	HCCA
BP	GO:0006325	chromatin organization	IEP	HCCA
BP	GO:0006338	chromatin remodeling	IEP	HCCA
BP	GO:0006520	amino acid metabolic process	IEP	HCCA
BP	GO:0006528	asparagine metabolic process	IEP	HCCA
BP	GO:0006529	asparagine biosynthetic process	IEP	HCCA
BP	GO:0008652	amino acid biosynthetic process	IEP	HCCA
BP	GO:0009066	aspartate family amino acid metabolic process	IEP	HCCA
BP	GO:0009067	aspartate family amino acid biosynthetic process	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
BP	GO:0016053	organic acid biosynthetic process	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	HCCA
MF	GO:0016884	carbon-nitrogen ligase activity, with glutamine as amido-N-donor	IEP	HCCA
MF	GO:0031491	nucleosome binding	IEP	HCCA
BP	GO:0044283	small molecule biosynthetic process	IEP	HCCA
MF	GO:0044877	protein-containing complex binding	IEP	HCCA
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:1901605	alpha-amino acid metabolic process	IEP	HCCA
BP	GO:1901607	alpha-amino acid biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR013170	mRNA_splic_Cwf21_dom	808	852
IPR000061	Surp	327	379
IPR000504	RRM_dom	180	253

External Links

No external refs found!

Zm00001e013823_P001 (Zm00001e013823)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation