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  5. Zm00001e013130_P001

Zm00001e013130_P001 (ATL43, Zm00001e013130)


Aliases : ATL43, Zm00001e013130

Description : RING-H2-class E3 ligase


Gene families : OG0002999 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002999_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e013130_P001
Cluster HCCA: Cluster_70

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00242060 ATL43,... Protein degradation.peptide tagging.Ubiquitin... 0.08 OrthoFinder output from all 47 species
AT5G05810 ATL43 RING/U-box superfamily protein 0.04 OrthoFinder output from all 47 species
Aspi01Gene00440.t1 ATL43, Aspi01Gene00440 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene18266.t1 Aspi01Gene18266 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Azfi_s0072.g037044 ATL43 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Ceric.35G063100.1 ATL43, Ceric.35G063100 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Dcu_g03051 ATL43 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
GSVIVT01029257001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.08 OrthoFinder output from all 47 species
Gb_16540 ATL43 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
LOC_Os06g48065.1 ATL43, LOC_Os06g48065 RING-H2-class E3 ligase 0.08 OrthoFinder output from all 47 species
Lfl_g15607 ATL43 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
MA_426345g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Pir_g36297 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g49281 ATL43 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Ppi_g30667 ATL43 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0074.g017194 ATL43 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Solyc05g018310.1.1 Solyc05g018310 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
Tin_g28001 ATL43 RING-H2-class ATL-subclass E3 ubiquiTin ligase &... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0030246 carbohydrate binding IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 119 162
No external refs found!