Aliases : Zm00001e013118
Description : Pentatricopeptide repeat-containing protein At3g61360 OS=Arabidopsis thaliana (sp|q9m2c8|pp291_arath : 272.0)
Gene families : OG0000142 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000142_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Zm00001e013118_P001 | |
Cluster | HCCA: Cluster_154 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00002p00205450 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At3g25210,... | 0.04 | OrthoFinder output from all 47 species | |
AMTR_s00003p00209480 | evm_27.TU.AmTr_v1... | Putative pentatricopeptide repeat-containing protein... | 0.04 | OrthoFinder output from all 47 species | |
AMTR_s00019p00238660 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At1g20300,... | 0.03 | OrthoFinder output from all 47 species | |
AMTR_s00022p00121040 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At1g77360,... | 0.03 | OrthoFinder output from all 47 species | |
AMTR_s00033p00156340 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At1g80550,... | 0.07 | OrthoFinder output from all 47 species | |
AMTR_s00044p00153760 | evm_27.TU.AmTr_v1... | Putative pentatricopeptide repeat-containing protein... | 0.02 | OrthoFinder output from all 47 species | |
AMTR_s00078p00045650 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At1g52640,... | 0.04 | OrthoFinder output from all 47 species | |
AMTR_s00105p00044870 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At1g71060,... | 0.03 | OrthoFinder output from all 47 species | |
AMTR_s00119p00084460 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At2g27800,... | 0.04 | OrthoFinder output from all 47 species | |
AMTR_s00131p00098210 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At1g13040,... | 0.04 | OrthoFinder output from all 47 species | |
AMTR_s00142p00073110 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At1g73400,... | 0.03 | OrthoFinder output from all 47 species | |
AT1G52640 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | OrthoFinder output from all 47 species | |
AT1G77360 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | OrthoFinder output from all 47 species | |
AT3G04130 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
AT3G16010 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.05 | OrthoFinder output from all 47 species | |
AT3G49730 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | OrthoFinder output from all 47 species | |
AT3G60050 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | OrthoFinder output from all 47 species | |
AT5G15010 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
Adi_g023342 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Adi_g059091 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Aev_g03187 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Als_g15135 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Aob_g11133 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Aob_g12835 | No alias | group-II intron mitochondrial splicing factor *(MISF68)... | 0.03 | OrthoFinder output from all 47 species | |
Aob_g15608 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Aspi01Gene59816.t1 | EMB2261, Aspi01Gene59816 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Cba_g10252 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Cba_g23699 | No alias | group-II intron mitochondrial splicing factor *(MISF68)... | 0.02 | OrthoFinder output from all 47 species | |
Ceric.18G058100.1 | Ceric.18G058100 | not classified & original description: pacid=50622152... | 0.03 | OrthoFinder output from all 47 species | |
Ceric.25G036800.1 | Ceric.25G036800 | group-II intron mitochondrial splicing factor *(MISF68)... | 0.02 | OrthoFinder output from all 47 species | |
Dac_g07047 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Dac_g10060 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Dcu_g03049 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Dcu_g03918 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Dcu_g05532 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Dcu_g39023 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Dde_g12312 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01007280001 | No alias | Pentatricopeptide repeat-containing protein At3g49730... | 0.04 | OrthoFinder output from all 47 species | |
GSVIVT01008815001 | No alias | Pentatricopeptide repeat-containing protein At1g77360,... | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01010329001 | No alias | Pentatricopeptide repeat-containing protein At3g04130,... | 0.05 | OrthoFinder output from all 47 species | |
GSVIVT01013390001 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01015982001 | No alias | Pentatricopeptide repeat-containing protein At1g80880,... | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01017111001 | No alias | Pentatricopeptide repeat-containing protein At3g16010... | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01017293001 | No alias | Pentatricopeptide repeat-containing protein At1g52640,... | 0.05 | OrthoFinder output from all 47 species | |
GSVIVT01022794001 | No alias | Pentatricopeptide repeat-containing protein At1g73400,... | 0.04 | OrthoFinder output from all 47 species | |
GSVIVT01026463001 | No alias | Pentatricopeptide repeat-containing protein At2g13420,... | 0.06 | OrthoFinder output from all 47 species | |
GSVIVT01027388001 | No alias | Pentatricopeptide repeat-containing protein At1g80550,... | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01029740001 | No alias | Pentatricopeptide repeat-containing protein At3g62470,... | 0.04 | OrthoFinder output from all 47 species | |
Gb_04017 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.04 | OrthoFinder output from all 47 species | |
Gb_05336 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.03 | OrthoFinder output from all 47 species | |
Gb_06907 | No alias | Pentatricopeptide repeat-containing protein At1g80550,... | 0.04 | OrthoFinder output from all 47 species | |
Gb_10944 | No alias | Pentatricopeptide repeat-containing protein At3g22670,... | 0.04 | OrthoFinder output from all 47 species | |
Gb_11871 | No alias | Pentatricopeptide repeat-containing protein At3g49730... | 0.06 | OrthoFinder output from all 47 species | |
Gb_12874 | No alias | Pentatricopeptide repeat-containing protein At3g61360... | 0.1 | OrthoFinder output from all 47 species | |
Gb_13617 | No alias | Pentatricopeptide repeat-containing protein At1g77360,... | 0.06 | OrthoFinder output from all 47 species | |
Gb_19514 | No alias | Pentatricopeptide repeat-containing protein At3g25210,... | 0.04 | OrthoFinder output from all 47 species | |
Gb_19758 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.05 | OrthoFinder output from all 47 species | |
Gb_20376 | No alias | group-II intron mitochondrial splicing factor (MISF68) | 0.03 | OrthoFinder output from all 47 species | |
Gb_20750 | No alias | Pentatricopeptide repeat-containing protein At5g64320,... | 0.05 | OrthoFinder output from all 47 species | |
Gb_21593 | No alias | Pentatricopeptide repeat-containing protein At1g71060,... | 0.04 | OrthoFinder output from all 47 species | |
Gb_22860 | No alias | Pentatricopeptide repeat-containing protein At1g77360,... | 0.05 | OrthoFinder output from all 47 species | |
Gb_23459 | No alias | Pentatricopeptide repeat-containing protein At1g77360,... | 0.06 | OrthoFinder output from all 47 species | |
Gb_27355 | No alias | Pentatricopeptide repeat-containing protein At5g11310,... | 0.03 | OrthoFinder output from all 47 species | |
Gb_27741 | No alias | Pentatricopeptide repeat-containing protein At1g55630... | 0.02 | OrthoFinder output from all 47 species | |
Gb_31784 | No alias | Pentatricopeptide repeat-containing protein At3g62470,... | 0.03 | OrthoFinder output from all 47 species | |
Gb_32987 | No alias | Pentatricopeptide repeat-containing protein At5g18390,... | 0.07 | OrthoFinder output from all 47 species | |
Gb_41835 | No alias | Pentatricopeptide repeat-containing protein At2g13420,... | 0.06 | OrthoFinder output from all 47 species | |
LOC_Os01g05860.1 | LOC_Os01g05860 | Putative pentatricopeptide repeat-containing protein... | 0.02 | OrthoFinder output from all 47 species | |
LOC_Os02g20160.1 | LOC_Os02g20160 | Putative pentatricopeptide repeat-containing protein... | 0.02 | OrthoFinder output from all 47 species | |
LOC_Os02g52220.1 | LOC_Os02g52220 | Pentatricopeptide repeat-containing protein At1g73400,... | 0.02 | OrthoFinder output from all 47 species | |
LOC_Os03g51840.1 | LOC_Os03g51840 | Pentatricopeptide repeat-containing protein At3g49730... | 0.04 | OrthoFinder output from all 47 species | |
LOC_Os05g28720.1 | LOC_Os05g28720 | Pentatricopeptide repeat-containing protein At3g62470,... | 0.07 | OrthoFinder output from all 47 species | |
LOC_Os10g36190.1 | LOC_Os10g36190 | Pentatricopeptide repeat-containing protein At1g55630... | 0.02 | OrthoFinder output from all 47 species | |
MA_10139g0010 | No alias | Pentatricopeptide repeat-containing protein At3g60050... | 0.04 | OrthoFinder output from all 47 species | |
MA_10219080g0010 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.03 | OrthoFinder output from all 47 species | |
MA_10432868g0030 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.04 | OrthoFinder output from all 47 species | |
MA_10433557g0010 | No alias | Pentatricopeptide repeat-containing protein At2g27800,... | 0.05 | OrthoFinder output from all 47 species | |
MA_12748g0020 | No alias | Pentatricopeptide repeat-containing protein At1g79540... | 0.02 | OrthoFinder output from all 47 species | |
MA_128052g0010 | No alias | Pentatricopeptide repeat-containing protein At3g53700,... | 0.04 | OrthoFinder output from all 47 species | |
MA_355286g0010 | No alias | Pentatricopeptide repeat-containing protein At5g15010,... | 0.02 | OrthoFinder output from all 47 species | |
MA_38485g0010 | No alias | Pentatricopeptide repeat-containing protein At1g63080,... | 0.03 | OrthoFinder output from all 47 species | |
MA_387336g0010 | No alias | Pentatricopeptide repeat-containing protein At3g22670,... | 0.02 | OrthoFinder output from all 47 species | |
MA_39587g0010 | No alias | Pentatricopeptide repeat-containing protein At2g13420,... | 0.04 | OrthoFinder output from all 47 species | |
MA_455059g0010 | No alias | no hits & (original description: none) | 0.03 | OrthoFinder output from all 47 species | |
MA_455059g0020 | No alias | Pentatricopeptide repeat-containing protein At3g62470,... | 0.02 | OrthoFinder output from all 47 species | |
MA_8206159g0010 | No alias | Pentatricopeptide repeat-containing protein At5g15010,... | 0.03 | OrthoFinder output from all 47 species | |
MA_845827g0010 | No alias | Pentatricopeptide repeat-containing protein At1g06710,... | 0.04 | OrthoFinder output from all 47 species | |
MA_929381g0010 | OTP43 | OTP43 mitochondrial RNA splicing factor | 0.04 | OrthoFinder output from all 47 species | |
MA_953698g0010 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.02 | OrthoFinder output from all 47 species | |
Msp_g08820 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ore_g08945 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0017.g007283 | No alias | not classified & original description: CDS=1-1626 | 0.03 | OrthoFinder output from all 47 species | |
Solyc01g006850.1.1 | Solyc01g006850 | Putative pentatricopeptide repeat-containing protein... | 0.06 | OrthoFinder output from all 47 species | |
Solyc01g097130.4.1 | Solyc01g097130 | Pentatricopeptide repeat-containing protein At3g62470,... | 0.02 | OrthoFinder output from all 47 species | |
Solyc03g112560.4.1 | Solyc03g112560 | Pentatricopeptide repeat-containing protein At1g80550,... | 0.04 | OrthoFinder output from all 47 species | |
Solyc03g116540.1.1 | Solyc03g116540 | Pentatricopeptide repeat-containing protein At1g52640,... | 0.06 | OrthoFinder output from all 47 species | |
Solyc03g117570.3.1 | Solyc03g117570 | Pentatricopeptide repeat-containing protein At1g80880,... | 0.06 | OrthoFinder output from all 47 species | |
Solyc04g071280.3.1 | Solyc04g071280 | Pentatricopeptide repeat-containing protein At3g61360... | 0.03 | OrthoFinder output from all 47 species | |
Solyc04g076370.4.1 | Solyc04g076370 | Pentatricopeptide repeat-containing protein At2g27800,... | 0.06 | OrthoFinder output from all 47 species | |
Solyc04g081950.4.1 | Solyc04g081950 | Pentatricopeptide repeat-containing protein At1g20300,... | 0.03 | OrthoFinder output from all 47 species | |
Solyc05g008330.3.1 | Solyc05g008330 | Pentatricopeptide repeat-containing protein At1g71060,... | 0.03 | OrthoFinder output from all 47 species | |
Solyc06g083200.3.1 | Solyc06g083200 | Pentatricopeptide repeat-containing protein At3g25210,... | 0.03 | OrthoFinder output from all 47 species | |
Solyc09g082390.3.1 | Solyc09g082390 | Pentatricopeptide repeat-containing protein At3g22670,... | 0.06 | OrthoFinder output from all 47 species | |
Solyc09g097840.2.1 | Solyc09g097840 | Pentatricopeptide repeat-containing protein At5g18390,... | 0.04 | OrthoFinder output from all 47 species | |
Solyc10g049570.3.1 | Solyc10g049570 | Pentatricopeptide repeat-containing protein At2g13420,... | 0.04 | OrthoFinder output from all 47 species | |
Solyc11g071670.2.1 | Solyc11g071670 | Putative pentatricopeptide repeat-containing protein... | 0.06 | OrthoFinder output from all 47 species | |
Spa_g12536 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Tin_g06924 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Tin_g09961 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Zm00001e005446_P003 | Zm00001e005446 | group-II intron mitochondrial splicing factor (MISF68) | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e005758_P001 | Zm00001e005758 | Pentatricopeptide repeat-containing protein At1g77360,... | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e015907_P001 | Zm00001e015907 | Pentatricopeptide repeat-containing protein At1g73400,... | 0.03 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003723 | RNA binding | IEP | HCCA |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0006364 | rRNA processing | IEP | HCCA |
BP | GO:0006396 | RNA processing | IEP | HCCA |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
MF | GO:0008270 | zinc ion binding | IEP | HCCA |
BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
BP | GO:0016072 | rRNA metabolic process | IEP | HCCA |
CC | GO:0030684 | preribosome | IEP | HCCA |
CC | GO:0030688 | preribosome, small subunit precursor | IEP | HCCA |
BP | GO:0034470 | ncRNA processing | IEP | HCCA |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
MF | GO:0046914 | transition metal ion binding | IEP | HCCA |
BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
CC | GO:1990904 | ribonucleoprotein complex | IEP | HCCA |
No external refs found! |