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  5. Zm00001e011846_P001

Zm00001e011846_P001 (Zm00001e011846)


Aliases : Zm00001e011846

Description : pre-60S ribosomal subunit assembly factor (NOP4)


Gene families : OG0005318 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005318_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e011846_P001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00226160 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AT2G21440 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.12 OrthoFinder output from all 47 species
Adi_g050354 No alias pre-60S ribosomal subunit assembly factor *(NOP4) &... 0.02 OrthoFinder output from all 47 species
Aev_g14065 No alias pre-60S ribosomal subunit assembly factor *(NOP4) &... 0.03 OrthoFinder output from all 47 species
Als_g33867 No alias pre-60S ribosomal subunit assembly factor *(NOP4) &... 0.06 OrthoFinder output from all 47 species
Aob_g14659 No alias pre-60S ribosomal subunit assembly factor *(NOP4) &... 0.03 OrthoFinder output from all 47 species
Aop_g68936 No alias pre-60S ribosomal subunit assembly factor *(NOP4) &... 0.04 OrthoFinder output from all 47 species
Azfi_s0087.g042420 No alias pre-60S ribosomal subunit assembly factor *(NOP4) &... 0.03 OrthoFinder output from all 47 species
Cba_g11828 No alias pre-60S ribosomal subunit assembly factor *(NOP4) &... 0.03 OrthoFinder output from all 47 species
Ceric.10G020200.1 Ceric.10G020200 pre-60S ribosomal subunit assembly factor *(NOP4) &... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000144.75 No alias No description available 0.05 OrthoFinder output from all 47 species
Cre02.g104650 No alias No description available 0.09 OrthoFinder output from all 47 species
Dcu_g16260 No alias pre-60S ribosomal subunit assembly factor *(NOP4) &... 0.02 OrthoFinder output from all 47 species
GSVIVT01024222001 No alias No description available 0.04 OrthoFinder output from all 47 species
Gb_24677 No alias pre-60S ribosomal subunit assembly factor (NOP4) 0.04 OrthoFinder output from all 47 species
LOC_Os03g58720.1 LOC_Os03g58720 pre-60S ribosomal subunit assembly factor (NOP4) 0.05 OrthoFinder output from all 47 species
LOC_Os03g60930.1 LOC_Os03g60930 pre-60S ribosomal subunit assembly factor (NOP4) 0.03 OrthoFinder output from all 47 species
Lfl_g19745 No alias pre-60S ribosomal subunit assembly factor *(NOP4) &... 0.03 OrthoFinder output from all 47 species
MA_10433709g0020 No alias pre-60S ribosomal subunit assembly factor (NOP4) 0.03 OrthoFinder output from all 47 species
Mp7g13580.1 No alias pre-60S ribosomal subunit assembly factor (NOP4) 0.08 OrthoFinder output from all 47 species
Msp_g13408 No alias pre-60S ribosomal subunit assembly factor *(NOP4) &... 0.03 OrthoFinder output from all 47 species
Nbi_g43889 No alias pre-60S ribosomal subunit assembly factor *(NOP4) &... 0.02 OrthoFinder output from all 47 species
Ore_g36856 No alias pre-60S ribosomal subunit assembly factor *(NOP4) &... 0.03 OrthoFinder output from all 47 species
Ppi_g02228 No alias pre-60S ribosomal subunit assembly factor *(NOP4) &... 0.02 OrthoFinder output from all 47 species
Ppi_g32963 No alias pre-60S ribosomal subunit assembly factor *(NOP4) &... 0.02 OrthoFinder output from all 47 species
Sam_g08068 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g36528 No alias pre-60S ribosomal subunit assembly factor *(NOP4) &... 0.04 OrthoFinder output from all 47 species
Solyc01g109990.4.1 Solyc01g109990 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Spa_g08758 No alias pre-60S ribosomal subunit assembly factor *(NOP4) &... 0.03 OrthoFinder output from all 47 species
Tin_g27533 No alias pre-60S ribosomal subunit assembly factor *(NOP4) &... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005049 nuclear export signal receptor activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
CC GO:0030684 preribosome IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140142 nucleocytoplasmic carrier activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 657 718
IPR000504 RRM_dom 29 99
IPR000504 RRM_dom 279 346
IPR000504 RRM_dom 493 551
No external refs found!