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  5. Zm00001e011790_P001

Zm00001e011790_P001 (ATARFA1B, ARFA1B,...)


Aliases : ATARFA1B, ARFA1B, Zm00001e011790

Description : ARF-GTPase


Gene families : OG0000301 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000301_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e011790_P001
Cluster HCCA: Cluster_169

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00096p00110370 ATARFA1B, ARFA1B Vesicle trafficking.Coat protein I (COPI) coatomer... 0.02 OrthoFinder output from all 47 species
AT1G70490 ARFA1D, ATARFA1D Ras-related small GTP-binding family protein 0.04 OrthoFinder output from all 47 species
AT2G15310 ATARFB1A, ARFB1A ADP-ribosylation factor B1A 0.02 OrthoFinder output from all 47 species
AT3G03120 ATARFB1C, ARFB1C ADP-ribosylation factor B1C 0.03 OrthoFinder output from all 47 species
Ala_g31131 ATARFA1F, ARFA1F ARF-GTPase *(ARF1) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g34157 ATARFA1F, ARFA1F ARF-GTPase *(ARF1) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g39673 ATARFA1F, ARFA1F not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene42739.t1 ATARFA1F,... ARF-GTPase *(ARF1) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g48801 ATARFA1F, ARFA1F not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.09G076800.1 ATARFA1B,... ARF-GTPase *(ARF1) & original description:... 0.05 OrthoFinder output from all 47 species
Ceric.12G047200.1 ATARFA1B,... ARF-GTPase *(ARF1) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.25G015600.1 ATARFA1B,... ARF-GTPase *(ARF1) & original description:... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000663.21 ATARFA1F, ARFA1F Vesicle trafficking.Coat protein I (COPI) coatomer... 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021127.129 ARFA1E, ATARFA1E Vesicle trafficking.Coat protein I (COPI) coatomer... 0.06 OrthoFinder output from all 47 species
Cre12.g486250 ARFA1E, ATARFA1E Vesicle trafficking.Coat protein I (COPI) coatomer... 0.04 OrthoFinder output from all 47 species
Cre12.g487850 ATARFB1B, ARFB1B Vesicle trafficking.Coat protein I (COPI) coatomer... 0.01 OrthoFinder output from all 47 species
Dac_g05473 ATARFA1F, ARFA1F not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g08383 ATARFA1F, ARFA1F not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g15058 ATARFA1F, ARFA1F ARF-GTPase *(ARF1) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g40902 ATARFA1F, ARFA1F not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01000224001 ATARFA1F, ARFA1F Vesicle trafficking.Coat protein I (COPI) coatomer... 0.03 OrthoFinder output from all 47 species
GSVIVT01028179001 ARFA1E, ATARFA1E Vesicle trafficking.Coat protein I (COPI) coatomer... 0.04 OrthoFinder output from all 47 species
Gb_01521 ATARFA1F, ARFA1F ARF-GTPase 0.02 OrthoFinder output from all 47 species
Len_g03591 ATARFA1F, ARFA1F ARF-GTPase *(ARF1) & original description: none 0.02 OrthoFinder output from all 47 species
Len_g05681 ATARFA1B, ARFA1B ARF-GTPase *(ARF1) & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g05275 ATARFA1B, ARFA1B ARF-GTPase *(ARF1) & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g11490 ARFA1E, ATARFA1E not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_101085g0010 ARFA1E, ATARFA1E ARF-GTPase 0.03 OrthoFinder output from all 47 species
MA_4349g0020 ATARFA1F, ARFA1F ARF-GTPase 0.02 OrthoFinder output from all 47 species
Mp4g04230.1 ATARFA1F, ARFA1F ARF-GTPase 0.04 OrthoFinder output from all 47 species
Mp8g07320.1 ATARFB1C, ARFB1C ARF-GTPase 0.07 OrthoFinder output from all 47 species
Msp_g28749 ATARFB1B, ARFB1B ARF-GTPase *(ARFA) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g06024 ATARFA1F, ARFA1F ARF-GTPase *(ARF1) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g13309 ATARFA1F, ARFA1F ARF-GTPase *(ARF1) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g28789 ATARFA1F, ARFA1F not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pp3c10_20740V3.1 ARFA1E,... ADP-ribosylation factor A1E 0.03 OrthoFinder output from all 47 species
Ppi_g16676 ARFA1E, ATARFA1E not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g008000.3.1 ATARFA1B,... ARF-GTPase 0.03 OrthoFinder output from all 47 species
Spa_g49716 ATARFA1B, ARFA1B ARF-GTPase *(ARF1) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g51173 ATARFA1F, ARFA1F ARF-GTPase *(ARF1) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g44186 ATARFA1B, ARFA1B ARF-GTPase *(ARF1) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
InterPro domains Description Start Stop
IPR006689 Small_GTPase_ARF/SAR 27 199
No external refs found!