Zm00001e011716_P001 (emb1138, Zm00001e011716)

Aliases : emb1138, Zm00001e011716

Description : RH3 plastidial RNA basal splicing factor

Gene families : OG0000466 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000466_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e011716_P001

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00003p00168720	emb1138,...	RNA processing.organelle machineries.RNA...	0.03	OrthoFinder output from all 47 species
AMTR_s00092p00127820	PMH2, ATRH53,...	RNA processing.organelle machineries.RNA...	0.03	OrthoFinder output from all 47 species
AMTR_s00126p00110160	PMH2, ATRH53,...	RNA processing.organelle machineries.RNA...	0.04	OrthoFinder output from all 47 species
AT3G22310	PMH1, ATRH9	putative mitochondrial RNA helicase 1	0.03	OrthoFinder output from all 47 species
AT5G26742	emb1138	DEAD box RNA helicase (RH3)	0.13	OrthoFinder output from all 47 species
Adi_g054902	PRH75	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g055950	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g055951	emb1138	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Adi_g056600	PRH75	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g079817	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.02	OrthoFinder output from all 47 species
Adi_g086708	emb1138	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ala_g14243	PRH75	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g22353	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.02	OrthoFinder output from all 47 species
Als_g07437	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.03	OrthoFinder output from all 47 species
Als_g26679	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.03	OrthoFinder output from all 47 species
Aob_g15554	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.02	OrthoFinder output from all 47 species
Aop_g04482	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.03	OrthoFinder output from all 47 species
Aop_g08480	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.02	OrthoFinder output from all 47 species
Azfi_s0022.g016145	PRH75	not classified & original description: CDS=1-2178	0.02	OrthoFinder output from all 47 species
Azfi_s0027.g023578	emb1138	not classified & original description: CDS=239-2545	0.03	OrthoFinder output from all 47 species
Azfi_s0052.g031680	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.02	OrthoFinder output from all 47 species
Azfi_s2641.g112487	emb1138	not classified & original description: CDS=202-2694	0.03	OrthoFinder output from all 47 species
Cba_g11616	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.04	OrthoFinder output from all 47 species
Cba_g18561	PRH75	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.01G054800.1	PRH75, Ceric.01G054800	not classified & original description: pacid=50590947...	0.02	OrthoFinder output from all 47 species
Ceric.05G054100.1	emb1138, Ceric.05G054100	group-II intron splicing RNA helicase *(RH3) & original...	0.04	OrthoFinder output from all 47 species
Ceric.06G054800.1	emb1138, Ceric.06G054800	not classified & original description: pacid=50619432...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020734.25	PMH2, ATRH53	DEAD-box ATP-dependent RNA helicase 53, mitochondrial...	0.01	OrthoFinder output from all 47 species
Cre17.g727700	emb1138	DEAD-box ATP-dependent RNA helicase 3, chloroplastic...	0.02	OrthoFinder output from all 47 species
Dac_g12671	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.02	OrthoFinder output from all 47 species
Dcu_g39360	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.03	OrthoFinder output from all 47 species
Dde_g04423	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.02	OrthoFinder output from all 47 species
Dde_g25038	PRH75	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g02845	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.03	OrthoFinder output from all 47 species
Ehy_g15362	emb1138	group-II intron splicing RNA helicase *(PMH) & original...	0.02	OrthoFinder output from all 47 species
GSVIVT01000821001	PMH2, ATRH53	RNA processing.organelle machineries.RNA...	0.03	OrthoFinder output from all 47 species
GSVIVT01031360001	emb1138	RNA processing.organelle machineries.RNA...	0.1	OrthoFinder output from all 47 species
Gb_04849	emb1138	RH3 plastidial RNA basal splicing factor	0.05	OrthoFinder output from all 47 species
Gb_35745	emb1138	RH3 plastidial RNA basal splicing factor	0.03	OrthoFinder output from all 47 species
LOC_Os03g61220.1	emb1138, LOC_Os03g61220	RH3 plastidial RNA basal splicing factor	0.06	OrthoFinder output from all 47 species
Len_g12708	emb1138	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Len_g56603	emb1138	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Lfl_g06681	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.02	OrthoFinder output from all 47 species
Lfl_g10151	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.03	OrthoFinder output from all 47 species
MA_10206082g0010	PMH2, ATRH53	RNA helicase (PMH)	0.03	OrthoFinder output from all 47 species
Mp3g17170.1	emb1138	RH3 plastidial RNA basal splicing factor. RNA helicase (PMH)	0.04	OrthoFinder output from all 47 species
Msp_g07724	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.03	OrthoFinder output from all 47 species
Nbi_g06285	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.03	OrthoFinder output from all 47 species
Ore_g29256	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.05	OrthoFinder output from all 47 species
Pir_g19704	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0064.g015897	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.03	OrthoFinder output from all 47 species
Sam_g06711	No alias	group-II intron splicing RNA helicase *(RH3) & original...	0.02	OrthoFinder output from all 47 species
Sam_g09733	No alias	group-II intron splicing RNA helicase *(RH3) & original...	0.02	OrthoFinder output from all 47 species
Sam_g13634	No alias	group-II intron splicing RNA helicase *(RH3) & original...	0.02	OrthoFinder output from all 47 species
Smo10677	emb1138	RNA processing.organelle machineries.RNA...	0.03	OrthoFinder output from all 47 species
Smo99603	emb1138	DEAD-box ATP-dependent RNA helicase 3, chloroplastic...	0.02	OrthoFinder output from all 47 species
Solyc08g042050.3.1	emb1138, Solyc08g042050	RH3 plastidial RNA basal splicing factor	0.07	OrthoFinder output from all 47 species
Solyc12g006320.3.1	PMH2, ATRH53,...	RNA helicase (PMH)	0.02	OrthoFinder output from all 47 species
Spa_g06691	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.03	OrthoFinder output from all 47 species
Spa_g08414	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.02	OrthoFinder output from all 47 species
Spa_g17328	emb1138	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Spa_g40629	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g07132	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.02	OrthoFinder output from all 47 species
Zm00001e003219_P001	PMH2, ATRH53,...	RNA helicase (PMH)	0.05	OrthoFinder output from all 47 species
Zm00001e018107_P001	PMH2, ATRH53,...	RNA helicase (PMH)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
MF	GO:0008270	zinc ion binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	112	284
IPR001650	Helicase_C	321	429
IPR001878	Znf_CCHC	728	744
IPR012562	GUCT	516	616

External Links

No external refs found!

Zm00001e011716_P001 (emb1138, Zm00001e011716)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation