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  5. Zm00001e011669_P002

Zm00001e011669_P002 (Zm00001e011669)


Aliases : Zm00001e011669

Description : Prolycopene isomerase, chloroplastic OS=Daucus carota (sp|q2vex9|crtso_dauca : 190.0)


Gene families : OG0002889 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002889_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e011669_P002
Cluster HCCA: Cluster_28

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00071p00187330 evm_27.TU.AmTr_v1... Prolycopene isomerase, chloroplastic OS=Daucus carota 0.03 OrthoFinder output from all 47 species
AT1G57770 No alias FAD/NAD(P)-binding oxidoreductase family protein 0.05 OrthoFinder output from all 47 species
Adi_g052232 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aev_g49491 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g06469 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g05632 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g07926 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g00730 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g33225 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g08553 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g27219 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Ceric.23G052400.1 Ceric.23G052400 not classified & original description: pacid=50610225... 0.1 OrthoFinder output from all 47 species
Ceric.32G057300.1 Ceric.32G057300 not classified & original description: pacid=50597506... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001258.10 No alias No description available 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020723.8 No alias No description available 0.06 OrthoFinder output from all 47 species
Cre09.g407200 No alias Prolycopene isomerase, chloroplastic OS=Solanum lycopersicum 0.08 OrthoFinder output from all 47 species
Cre16.g674950 No alias Prolycopene isomerase, chloroplastic OS=Solanum lycopersicum 0.01 OrthoFinder output from all 47 species
Dac_g12181 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g23383 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g10069 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g14193 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Dde_g06829 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g23170 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01023233001 No alias Prolycopene isomerase, chloroplastic OS=Daucus carota 0.06 OrthoFinder output from all 47 species
Gb_39487 No alias Prolycopene isomerase, chloroplastic OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Gb_39488 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os03g62510.1 LOC_Os03g62510 Prolycopene isomerase, chloroplastic OS=Daucus carota... 0.13 OrthoFinder output from all 47 species
Lfl_g05426 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_10428345g0020 No alias Prolycopene isomerase, chloroplastic OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
MA_10428660g0010 No alias Prolycopene isomerase 1, chloroplastic OS=Oncidium... 0.08 OrthoFinder output from all 47 species
Ppi_g10834 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Sacu_v1.1_s0052.g014061 No alias not classified & original description: CDS=115-1746 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0128.g021866 No alias not classified & original description: CDS=168-1886 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0204.g025671 No alias not classified & original description: CDS=41-1720 0.03 OrthoFinder output from all 47 species
Sam_g07020 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo229587 No alias Prolycopene isomerase 1, chloroplastic OS=Oncidium... 0.04 OrthoFinder output from all 47 species
Solyc05g010180.4.1 Solyc05g010180 Prolycopene isomerase, chloroplastic OS=Daucus carota... 0.04 OrthoFinder output from all 47 species
Spa_g10638 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g23774 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0016491 oxidoreductase activity IEA Interproscan
BP GO:0055114 obsolete oxidation-reduction process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004197 cysteine-type endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004813 alanine-tRNA ligase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006419 alanyl-tRNA aminoacylation IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0016485 protein processing IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
BP GO:0071586 CAAX-box protein processing IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002937 Amino_oxidase 80 576
No external refs found!