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  5. Zm00001e011476_P001

Zm00001e011476_P001 (Zm00001e011476)


Aliases : Zm00001e011476

Description : component Sm-B of U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex


Gene families : OG0007641 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007641_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e011476_P001
Cluster HCCA: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
Azfi_s0272.g061251 No alias component *(Sm-B) of U1/U2/U4/U5-associated Sm accessory... 0.04 OrthoFinder output from all 47 species
Ceric.03G034300.1 smB, Ceric.03G034300 component *(Sm-B) of U1/U2/U4/U5-associated Sm accessory... 0.02 OrthoFinder output from all 47 species
Ceric.07G074100.1 smB, Ceric.07G074100 component *(Sm-B) of U1/U2/U4/U5-associated Sm accessory... 0.03 OrthoFinder output from all 47 species
GSVIVT01034611001 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.03 OrthoFinder output from all 47 species
LOC_Os07g07220.1 smB, LOC_Os07g07220 component Sm-B of U1/U2/U4/U5-associated Sm accessory... 0.03 OrthoFinder output from all 47 species
MA_10435493g0010 No alias component Sm-B of U1/U2/U4/U5-associated Sm accessory... 0.02 OrthoFinder output from all 47 species
Solyc01g094540.4.1 smB, Solyc01g094540 component Sm-B of U1/U2/U4/U5-associated Sm accessory... 0.03 OrthoFinder output from all 47 species
Solyc05g049950.3.1 smB, Solyc05g049950 component Sm-B of U1/U2/U4/U5-associated Sm accessory... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
MF GO:0071949 FAD binding IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 9 83
No external refs found!