Zm00001e011244_P001 (Zm00001e011244)

Aliases : Zm00001e011244

Description : core component Gar1 of H/ACA small nucleolar ribonucleoprotein (snoRNP) RNA pseudouridylation complex

Gene families : OG0006021 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006021_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e011244_P001

Target	Alias	Description	ECC score	Gene Family Method
AT3G03920	No alias	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein	0.04	OrthoFinder output from all 47 species
Ceric.34G022300.1	Ceric.34G022300	core component *(GAR1) of H/ACA snoRNP RNA...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000310.30	No alias	RNA processing.RNA modification.pseudouridylation.H/ACA...	0.02	OrthoFinder output from all 47 species
Cre13.g567850	No alias	RNA processing.RNA modification.pseudouridylation.H/ACA...	0.04	OrthoFinder output from all 47 species
Ehy_g00452	No alias	core component *(GAR1) of H/ACA snoRNP RNA...	0.02	OrthoFinder output from all 47 species
GSVIVT01033401001	No alias	RNA processing.RNA modification.pseudouridylation.H/ACA...	0.02	OrthoFinder output from all 47 species
LOC_Os11g37080.1	LOC_Os11g37080	core component Gar1 of H/ACA small nucleolar...	0.04	OrthoFinder output from all 47 species
Pp3c25_15020V3.1	Pp3c25_15020	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein	0.03	OrthoFinder output from all 47 species
Pp3c5_28430V3.1	Pp3c5_28430	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0038.g011917	No alias	core component *(GAR1) of H/ACA snoRNP RNA...	0.03	OrthoFinder output from all 47 species
Sam_g01576	No alias	core component *(GAR1) of H/ACA snoRNP RNA...	0.02	OrthoFinder output from all 47 species
Solyc10g078540.3.1	Solyc10g078540	core component Gar1 of H/ACA small nucleolar...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0022613	ribonucleoprotein complex biogenesis	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0042254	ribosome biogenesis	IEA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044085	cellular component biogenesis	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
CC	GO:0000178	exosome (RNase complex)	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
CC	GO:1905354	exoribonuclease complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007504	H/ACA_rnp_Gar1/Naf1	83	175

External Links

No external refs found!