LOC_Os03g38740 (Os03g0583900)


Aliases : Os03g0583900

Description : 27.1.20 RNA.processing.degradation dicer Encodes a Dicer-like protein that functions in the antiviral silencing response in turnip-crinkle virus-infected plants but not in TMV or CMV-strain-Y-infected plants. Involved in the production of ta-siRNAs. Partially antagonizes the production of miRNAs by DCL1. Substitutes for DCL4 to produce viral siRNA when DCL4 is missing or inhibited. Able to produce siRNAs but not miRNAs. dicer-like 2 (DCL2)


Gene families : OG_01_0000130 (Gene family) Phylogenetic Tree(s): OG0000130_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): LOC_Os03g38740
Cluster HCCA cluster: Cluster_201

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01030481001 No alias 27.1.19 RNA.processing.ribonucleases RNAse II-like 1 (RTL1) 0.02 Gene family
LOC_Os06g25250 Os06g0358800 27.1.19 RNA.processing.ribonucleases RNAse II-like 1 (RTL1) 0.01 Gene family
MA_6956785g0010 No alias 27.1.20 RNA.processing.degradation dicer Encodes a Dicer... 0.01 Gene family
Solyc05g041920.3.1 Solyc05g041920.3 27.1.19 RNA.processing.ribonucleases RNAse II-like 1 (RTL1) 0.02 Gene family
Solyc07g049160.3.1 Solyc07g049160.3 27.1.19 RNA.processing.ribonucleases RNAse II-like 1 (RTL1) 0.02 Gene family

Type GO Term Name Evidence Source
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 37 204
IPR001650 Helicase_C 385 499
IPR000999 RNase_III_dom 1197 1307
IPR000999 RNase_III_dom 1006 1123
IPR003100 PAZ_dom 832 965
IPR005034 Dicer_dimerisation_dom 569 648
No external refs found!