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  5. Zm00001e010959_P002

Zm00001e010959_P002 (Zm00001e010959)


Aliases : Zm00001e010959

Description : Pentatricopeptide repeat-containing protein At3g18020 OS=Arabidopsis thaliana (sp|q9lsk8|pp240_arath : 473.0)


Gene families : OG0018315 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0018315_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e010959_P002
Cluster HCCA: Cluster_154

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00213530 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g18020... 0.04 OrthoFinder output from all 47 species
AT3G18020 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 OrthoFinder output from all 47 species
Gb_06808 No alias Pentatricopeptide repeat-containing protein At3g18020... 0.06 OrthoFinder output from all 47 species
Solyc03g118790.3.1 Solyc03g118790 Pentatricopeptide repeat-containing protein At3g18020... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 536 565
IPR002885 Pentatricopeptide_repeat 311 337
IPR002885 Pentatricopeptide_repeat 462 511
IPR002885 Pentatricopeptide_repeat 238 284
IPR002885 Pentatricopeptide_repeat 567 610
IPR002885 Pentatricopeptide_repeat 390 438
No external refs found!