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  5. Zm00001e010450_P001

Zm00001e010450_P001 (EMB3011, Zm00001e010450)


Aliases : EMB3011, Zm00001e010450

Description : RNA helicase (Prp16)


Gene families : OG0000184 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000184_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e010450_P001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00154740 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.spliceosome... 0.02 OrthoFinder output from all 47 species
AMTR_s00025p00202360 evm_27.TU.AmTr_v1... Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 OrthoFinder output from all 47 species
AT1G32490 ESP3, EMB2733 RNA helicase family protein 0.03 OrthoFinder output from all 47 species
AT5G13010 EMB3011 RNA helicase family protein 0.03 OrthoFinder output from all 47 species
Adi_g008220 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g11422 No alias RNA helicase *(Prp22) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g14240 ESP3, EMB2733 RNA helicase *(Prp2) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g02597 ESP3, EMB2733 RNA helicase *(Prp2) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g38553 EMB3011 RNA helicase *(Prp16) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g64809 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0293.g063477 EMB3011 RNA helicase *(Prp16) & original description: CDS=81-3746 0.04 OrthoFinder output from all 47 species
Cba_g13014 EMB3011 RNA helicase *(Prp16) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.01G059500.1 Ceric.01G059500 not classified & original description: pacid=50591809... 0.04 OrthoFinder output from all 47 species
Ceric.21G075900.1 EMB3011, Ceric.21G075900 RNA helicase *(Prp16) & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.37G064800.1 ESP3, EMB2733,... RNA helicase *(Prp2) & original description:... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000842.2 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000984.27 ESP3, EMB2733 Pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.03 OrthoFinder output from all 47 species
Dac_g11433 No alias RNA helicase Prp43 of Intron-Lariat Spliceosome complex... 0.02 OrthoFinder output from all 47 species
Dac_g44524 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g13368 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g22478 EMB3011 RNA helicase *(Prp16) & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g25246 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01029863001 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 OrthoFinder output from all 47 species
Gb_14270 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 OrthoFinder output from all 47 species
Gb_30670 No alias helicase Prp43 of Intron-Lariat Spliceosome complex 0.03 OrthoFinder output from all 47 species
LOC_Os07g32430.1 EMB3011, LOC_Os07g32430 RNA helicase (Prp16) 0.07 OrthoFinder output from all 47 species
Len_g08915 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g09738 ESP3, EMB2733 RNA helicase *(Prp2) & original description: none 0.04 OrthoFinder output from all 47 species
Len_g31554 No alias RNA helicase *(Prp22) & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g05720 EMB3011 RNA helicase *(Prp16) & original description: none 0.04 OrthoFinder output from all 47 species
MA_10435486g0020 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 OrthoFinder output from all 47 species
MA_629782g0010 EMB3011 Pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.03 OrthoFinder output from all 47 species
Mp2g13680.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.05 OrthoFinder output from all 47 species
Mp4g16380.1 ESP3, EMB2733 RNA helicase (Prp2) 0.02 OrthoFinder output from all 47 species
Nbi_g21732 ESP3, EMB2733 RNA helicase *(Prp2) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g42980 EMB3011 RNA helicase *(Prp16) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g42990 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g44212 No alias RNA helicase Prp43 of Intron-Lariat Spliceosome complex... 0.04 OrthoFinder output from all 47 species
Pir_g07808 No alias RNA helicase Prp43 of Intron-Lariat Spliceosome complex... 0.02 OrthoFinder output from all 47 species
Pir_g18506 ESP3, EMB2733 RNA helicase *(Prp2) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g17516 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g14599 No alias RNA helicase *(Prp16) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g16823 No alias RNA helicase Prp43 of Intron-Lariat Spliceosome complex... 0.02 OrthoFinder output from all 47 species
Sam_g29503 No alias RNA helicase *(Prp22) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g079250.3.1 Solyc01g079250 helicase Prp43 of Intron-Lariat Spliceosome complex 0.03 OrthoFinder output from all 47 species
Solyc03g115390.4.1 ESP3, EMB2733,... RNA helicase (Prp2) 0.03 OrthoFinder output from all 47 species
Solyc07g039550.4.1 Solyc07g039550 Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 OrthoFinder output from all 47 species
Solyc10g076910.2.1 EMB3011, Solyc10g076910 RNA helicase (Prp16) 0.06 OrthoFinder output from all 47 species
Spa_g12111 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g17882 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g01282 EMB3011 RNA helicase *(Prp16) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001650 Helicase_C 973 1098
IPR011545 DEAD/DEAH_box_helicase_dom 775 924
IPR011709 DEAD-box_helicase_OB_fold 1306 1383
IPR007502 Helicase-assoc_dom 1162 1248
No external refs found!