Zm00001e010317_P001 (Zm00001e010317)

Aliases : Zm00001e010317

Description : component RPL40 of LSU proteome component

Gene families : OG0000054 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e010317_P001

Target	Alias	Description	ECC score	Gene Family Method
Als_g33040	UBQ11	UBQ ubiquitin-fold protein & original description: none	0.04	OrthoFinder output from all 47 species
Als_g41833	UBQ11	UBQ ubiquitin-fold protein & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g18726	UBQ14	UBQ ubiquitin-fold protein & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g70711	UBQ11	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g79067	UBQ11	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.03G010600.1	UBQ14, Ceric.03G010600	UBQ ubiquitin-fold protein & original description:...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021318.73	UBQ10	Protein degradation.peptide tagging.Ubiquitin...	0.01	OrthoFinder output from all 47 species
Dcu_g51446	UBQ11	UBQ ubiquitin-fold protein & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g17886	UBQ6	component *(eS31) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
LOC_Os06g46770.2	UBQ10, LOC_Os06g46770	ubiquitin-fold protein (UBQ)	0.03	OrthoFinder output from all 47 species
Len_g36572	UBQ11	UBQ ubiquitin-fold protein & original description: none	0.04	OrthoFinder output from all 47 species
Lfl_g23519	UBQ14	UBQ ubiquitin-fold protein & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g23240	UBQ4	UBQ ubiquitin-fold protein & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g21546	No alias	component *(eL40) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Pir_g45859	UBQ14	UBQ ubiquitin-fold protein & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g35753	UBQ14	UBQ ubiquitin-fold protein & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g47816	UBQ6	component *(eS31) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Ppi_g55284	UBQ4	UBQ ubiquitin-fold protein & original description: none	0.02	OrthoFinder output from all 47 species
Smo271198	UBQ4	Protein degradation.peptide tagging.Ubiquitin...	0.03	OrthoFinder output from all 47 species
Zm00001e000965_P001	Zm00001e000965	component RPL40 of LSU proteome component	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
BP	GO:0042255	ribosome assembly	IEP	HCCA
BP	GO:0042256	cytosolic ribosome assembly	IEP	HCCA
MF	GO:0043021	ribonucleoprotein complex binding	IEP	HCCA
MF	GO:0043022	ribosome binding	IEP	HCCA
MF	GO:0044877	protein-containing complex binding	IEP	HCCA
BP	GO:0070925	organelle assembly	IEP	HCCA
BP	GO:0140694	non-membrane-bounded organelle assembly	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001975	Ribosomal_L40e	87	135
IPR000626	Ubiquitin-like_dom	4	76

External Links

No external refs found!

Zm00001e010317_P001 (Zm00001e010317)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation