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  5. Zm00001e010238_P001

Zm00001e010238_P001 (Zm00001e010238)


Aliases : Zm00001e010238

Description : basal transcription factor (TFIIb)


Gene families : OG0001894 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001894_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e010238_P001

Target Alias Description ECC score Gene Family Method Actions
AT3G10330 No alias Cyclin-like family protein 0.03 OrthoFinder output from all 47 species
Azfi_s0010.g012128 No alias not classified & original description: CDS=149-1144 0.03 OrthoFinder output from all 47 species
Dde_g32414 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc10g079990.3.1 Solyc10g079990 Transcription initiation factor IIB-2 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0017025 TBP-class protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030976 thiamine pyrophosphate binding IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
MF GO:0050997 quaternary ammonium group binding IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA
InterPro domains Description Start Stop
IPR013150 TFIIB_cyclin 214 281
IPR013150 TFIIB_cyclin 112 176
IPR013137 Znf_TFIIB 6 47
No external refs found!