Zm00001e010187_P002 (PRH75, Zm00001e010187)

Aliases : PRH75, Zm00001e010187

Description : DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa subsp. japonica (sp|q650t9|rh7_orysj : 844.0)

Gene families : OG0000466 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000466_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e010187_P002
Cluster	HCCA: Cluster_71

Target	Alias	Description	ECC score	Gene Family Method
Cre02.g118300	PRH75	DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa...	0.03	OrthoFinder output from all 47 species
LOC_Os09g34910.1	PRH75, LOC_Os09g34910	DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0070.g016750	PRH75	not classified & original description: CDS=177-2189	0.03	OrthoFinder output from all 47 species
Solyc07g044760.3.1	PMH2, ATRH53,...	RNA helicase (PMH)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0005525	GTP binding	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	369	468
IPR011545	DEAD/DEAH_box_helicase_dom	147	325
IPR012562	GUCT	558	653

External Links

No external refs found!