Aliases : Zm00001e010143
Description : DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa subsp. japonica (sp|q0inc5|rh28_orysj : 851.0)
Gene families : OG0004454 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004454_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00121p00103870 | evm_27.TU.AmTr_v1... | DEAD-box ATP-dependent RNA helicase 28 OS=Arabidopsis thaliana | 0.03 | OrthoFinder output from all 47 species | |
Adi_g056651 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Als_g14510 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Azfi_s0021.g015637 | No alias | not classified & original description: CDS=1-2424 | 0.06 | OrthoFinder output from all 47 species | |
Cba_g15160 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ceric.09G038600.1 | Ceric.09G038600 | not classified & original description: pacid=50586912... | 0.02 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00000792.35 | No alias | DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... | 0.07 | OrthoFinder output from all 47 species | |
Cre10.g420900 | No alias | DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... | 0.1 | OrthoFinder output from all 47 species | |
Dde_g26304 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
GSVIVT01009935001 | No alias | DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... | 0.08 | OrthoFinder output from all 47 species | |
Gb_16576 | No alias | DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os12g29660.1 | LOC_Os12g29660 | DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... | 0.08 | OrthoFinder output from all 47 species | |
Lfl_g05640 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
MA_40229g0010 | No alias | DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... | 0.05 | OrthoFinder output from all 47 species | |
Mp4g21330.1 | No alias | DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... | 0.07 | OrthoFinder output from all 47 species | |
Ore_g27091 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Pir_g18860 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ppi_g59335 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Sam_g13644 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
Smo107914 | No alias | DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... | 0.03 | OrthoFinder output from all 47 species | |
Solyc04g081580.4.1 | Solyc04g081580 | DEAD-box ATP-dependent RNA helicase 28 OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
MF | GO:0005524 | ATP binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | HCCA |
CC | GO:0005575 | cellular_component | IEP | HCCA |
CC | GO:0005634 | nucleus | IEP | HCCA |
CC | GO:0005643 | nuclear pore | IEP | HCCA |
CC | GO:0005732 | sno(s)RNA-containing ribonucleoprotein complex | IEP | HCCA |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0006351 | DNA-templated transcription | IEP | HCCA |
BP | GO:0006364 | rRNA processing | IEP | HCCA |
BP | GO:0006511 | ubiquitin-dependent protein catabolic process | IEP | HCCA |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
BP | GO:0016072 | rRNA metabolic process | IEP | HCCA |
MF | GO:0016779 | nucleotidyltransferase activity | IEP | HCCA |
MF | GO:0017056 | structural constituent of nuclear pore | IEP | HCCA |
MF | GO:0019899 | enzyme binding | IEP | HCCA |
BP | GO:0019941 | modification-dependent protein catabolic process | IEP | HCCA |
BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | HCCA |
MF | GO:0031625 | ubiquitin protein ligase binding | IEP | HCCA |
BP | GO:0032774 | RNA biosynthetic process | IEP | HCCA |
CC | GO:0032991 | protein-containing complex | IEP | HCCA |
MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | HCCA |
CC | GO:0034457 | Mpp10 complex | IEP | HCCA |
BP | GO:0034470 | ncRNA processing | IEP | HCCA |
BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
BP | GO:0042254 | ribosome biogenesis | IEP | HCCA |
CC | GO:0043226 | organelle | IEP | HCCA |
CC | GO:0043227 | membrane-bounded organelle | IEP | HCCA |
CC | GO:0043229 | intracellular organelle | IEP | HCCA |
CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | HCCA |
BP | GO:0043632 | modification-dependent macromolecule catabolic process | IEP | HCCA |
BP | GO:0044085 | cellular component biogenesis | IEP | HCCA |
BP | GO:0044265 | cellular macromolecule catabolic process | IEP | HCCA |
MF | GO:0044389 | ubiquitin-like protein ligase binding | IEP | HCCA |
BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
BP | GO:0051603 | proteolysis involved in protein catabolic process | IEP | HCCA |
BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
BP | GO:0097659 | nucleic acid-templated transcription | IEP | HCCA |
MF | GO:0097747 | RNA polymerase activity | IEP | HCCA |
CC | GO:0110165 | cellular anatomical entity | IEP | HCCA |
CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
CC | GO:1990904 | ribonucleoprotein complex | IEP | HCCA |
No external refs found! |