Zm00001e010121_P001 (PBF1, Zm00001e010121)

Aliases : PBF1, Zm00001e010121

Description : component beta type-6 of 26S proteasome

Gene families : OG0004409 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004409_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e010121_P001

Target	Alias	Description	ECC score	Gene Family Method
AT3G60820	PBF1	N-terminal nucleophile aminohydrolases (Ntn hydrolases)...	0.08	OrthoFinder output from all 47 species
Aev_g01998	PBF1	beta-type-6 component *(PBF) of 26S proteasome &...	0.06	OrthoFinder output from all 47 species
Als_g08527	PBF1	beta-type-6 component *(PBF) of 26S proteasome &...	0.03	OrthoFinder output from all 47 species
Als_g37944	PBF1	beta-type-6 component *(PBF) of 26S proteasome &...	0.02	OrthoFinder output from all 47 species
Aop_g00288	PBF1	beta-type-6 component *(PBF) of 26S proteasome &...	0.05	OrthoFinder output from all 47 species
Azfi_s0392.g067771	PBF1	beta-type-6 component *(PBF) of 26S proteasome &...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001339.5	PBF1	Protein degradation.26S proteasome.20S core...	0.05	OrthoFinder output from all 47 species
Cre26.g756797	PBF1	Protein degradation.26S proteasome.20S core...	0.12	OrthoFinder output from all 47 species
Dac_g02574	PBF1	beta-type-6 component *(PBF) of 26S proteasome &...	0.03	OrthoFinder output from all 47 species
Dcu_g00884	PBF1	beta-type-6 component *(PBF) of 26S proteasome &...	0.04	OrthoFinder output from all 47 species
Dde_g01948	PBF1	beta-type-6 component *(PBF) of 26S proteasome &...	0.02	OrthoFinder output from all 47 species
GSVIVT01027613001	PBF1	Protein degradation.26S proteasome.20S core...	0.05	OrthoFinder output from all 47 species
Gb_25087	PBF1	component beta type-6 of 26S proteasome	0.04	OrthoFinder output from all 47 species
LOC_Os09g32800.1	PBF1, LOC_Os09g32800	component beta type-6 of 26S proteasome	0.09	OrthoFinder output from all 47 species
Lfl_g00743	PBF1	beta-type-6 component *(PBF) of 26S proteasome &...	0.03	OrthoFinder output from all 47 species
Mp1g12450.1	PBF1	component beta type-6 of 26S proteasome	0.04	OrthoFinder output from all 47 species
Msp_g43692	PBF1	beta-type-6 component *(PBF) of 26S proteasome &...	0.05	OrthoFinder output from all 47 species
Pir_g12796	PBF1	beta-type-6 component *(PBF) of 26S proteasome &...	0.03	OrthoFinder output from all 47 species
Pp3c16_16960V3.1	PBF1, Pp3c16_16960	N-terminal nucleophile aminohydrolases (Ntn hydrolases)...	0.01	OrthoFinder output from all 47 species
Smo124882	PBF1	Protein degradation.26S proteasome.20S core...	0.03	OrthoFinder output from all 47 species
Smo94273	PBF1	Protein degradation.26S proteasome.20S core...	0.05	OrthoFinder output from all 47 species
Solyc02g084920.3.1	PBF1, Solyc02g084920	component beta type-6 of 26S proteasome	0.07	OrthoFinder output from all 47 species
Spa_g13091	PBF1	beta-type-6 component *(PBF) of 26S proteasome &...	0.03	OrthoFinder output from all 47 species
Spa_g16539	PBF1	beta-type-6 component *(PBF) of 26S proteasome &...	0.04	OrthoFinder output from all 47 species
Tin_g30516	PBF1	beta-type-6 component *(PBF) of 26S proteasome &...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004175	endopeptidase activity	None	Extended
MF	GO:0004298	threonine-type endopeptidase activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005839	proteasome core complex	IEA	Interproscan
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	IEA	Interproscan
MF	GO:0070003	threonine-type peptidase activity	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005484	SNAP receptor activity	IEP	HCCA
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	HCCA
BP	GO:0006890	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum	IEP	HCCA
BP	GO:0009056	catabolic process	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
CC	GO:0019773	proteasome core complex, alpha-subunit complex	IEP	HCCA
BP	GO:0019941	modification-dependent protein catabolic process	IEP	HCCA
MF	GO:0030145	manganese ion binding	IEP	HCCA
MF	GO:0030674	protein-macromolecule adaptor activity	IEP	HCCA
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
BP	GO:0048193	Golgi vesicle transport	IEP	HCCA
MF	GO:0060090	molecular adaptor activity	IEP	HCCA
BP	GO:1901575	organic substance catabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001353	Proteasome_sua/b	11	206

External Links

No external refs found!

Zm00001e010121_P001 (PBF1, Zm00001e010121)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation