Zm00001e009777_P001 (PUB39, Zm00001e009777)


Aliases : PUB39, Zm00001e009777

Description : E3 ubiquitin ligase (PUB)


Gene families : OG0004266 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004266_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e009777_P001

Target Alias Description ECC score Gene Family Method Actions
Dcu_g40033 PUB38, ATPUB38 U-Box-group-II E3 ubiquitin ligase & original description: none 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0009605 response to external stimulus IEP HCCA
BP GO:0009606 tropism IEP HCCA
BP GO:0010274 hydrotropism IEP HCCA
InterPro domains Description Start Stop
IPR000225 Armadillo 265 305
IPR003613 Ubox_domain 48 114
No external refs found!