AMTR_s00057p00042800 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00057.23

Description : RNA biosynthesis.transcriptional activation.CAMTA transcription factor


Gene families : OG_01_0000551 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000551_tree ,
OG_02_0008292 (LandPlants) Phylogenetic Tree(s): OG_02_0008292_tree ,
OG_03_0006959 (SeedPlants) Phylogenetic Tree(s): OG_03_0006959_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00057p00042800
Cluster HCCA: Cluster_168

Target Alias Description ECC score Gene Family Method Actions
AT2G22300 CAMTA3, SR1 signal responsive 1 0.02 Archaeplastida
AT4G16150 No alias calmodulin binding;transcription regulators 0.06 Archaeplastida
GSVIVT01004860001 No alias RNA biosynthesis.transcriptional activation.CAMTA... 0.03 Archaeplastida
GSVIVT01010510001 No alias RNA biosynthesis.transcriptional activation.CAMTA... 0.03 Archaeplastida
Gb_35918 No alias transcription factor (CAMTA) 0.02 Archaeplastida
LOC_Os07g30774.1 No alias transcription factor (CAMTA) 0.03 Archaeplastida
MA_10434871g0010 No alias transcription factor (CAMTA) 0.03 Archaeplastida
MA_10437204g0010 No alias transcription factor (CAMTA) 0.03 Archaeplastida
Solyc01g105230.4.1 No alias transcription factor (CAMTA) 0.03 Archaeplastida
Solyc05g015650.3.1 No alias transcription factor (CAMTA) 0.03 Archaeplastida
Zm00001e035004_P001 No alias transcription factor (CAMTA) 0.02 Archaeplastida
AT4G16150 No alias calmodulin binding;transcription regulators 0.04 LandPlants
LOC_Os07g30774.1 No alias transcription factor (CAMTA) 0.03 LandPlants
MA_10437204g0010 No alias transcription factor (CAMTA) 0.02 LandPlants
AT3G16940 No alias calmodulin binding;transcription regulators 0.01 SeedPlants
AT4G16150 No alias calmodulin binding;transcription regulators 0.04 SeedPlants
LOC_Os07g30774.1 No alias transcription factor (CAMTA) 0.03 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000048 IQ_motif_EF-hand-BS 746 762
IPR000048 IQ_motif_EF-hand-BS 787 805
IPR000048 IQ_motif_EF-hand-BS 763 782
IPR005559 CG-1_dom 39 155
IPR020683 Ankyrin_rpt-contain_dom 564 628
No external refs found!