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Aliases : Zm00001e009450
Description : Pre-mRNA-splicing factor 38 OS=Arabidopsis thaliana (sp|q8lb54|prp38_arath : 318.0)
Gene families : OG0004863 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004863_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Zm00001e009450_P001 | |
| Cluster | HCCA: Cluster_170 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT2G40650 | No alias | PRP38 family protein | 0.07 | OrthoFinder output from all 47 species | |
| Adi_g012219 | No alias | splicing factor *(PRP38) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aev_g05303 | No alias | splicing factor *(PRP38) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g58256 | No alias | splicing factor *(PRP38) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g05834 | No alias | splicing factor *(PRP38) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Aop_g13422 | No alias | splicing factor *(PRP38) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aspi01Gene13915.t1 | Aspi01Gene13915 | splicing factor *(PRP38) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0185.g056662 | No alias | splicing factor *(PRP38) & original description: CDS=131-1414 | 0.06 | OrthoFinder output from all 47 species | |
| Cba_g00905 | No alias | splicing factor *(PRP38) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.13G099000.1 | Ceric.13G099000 | splicing factor *(PRP38) & original description:... | 0.05 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00000144.24 | No alias | Pre-mRNA-splicing factor 38 OS=Arabidopsis thaliana | 0.01 | OrthoFinder output from all 47 species | |
| Cre12.g503400 | No alias | Pre-mRNA-splicing factor 38 OS=Arabidopsis thaliana | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g08450 | No alias | splicing factor *(PRP38) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os09g01630.1 | LOC_Os09g01630 | Pre-mRNA-splicing factor 38 OS=Arabidopsis thaliana... | 0.12 | OrthoFinder output from all 47 species | |
| Mp4g12850.1 | No alias | Pre-mRNA-splicing factor 38 OS=Arabidopsis thaliana... | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g07486 | No alias | splicing factor *(PRP38) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0084.g018248 | No alias | splicing factor *(PRP38) & original description: CDS=41-1213 | 0.02 | OrthoFinder output from all 47 species | |
| Solyc01g100060.4.1 | Solyc01g100060 | Pre-mRNA-splicing factor 38 OS=Arabidopsis thaliana... | 0.07 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| BP | GO:0006364 | rRNA processing | IEP | HCCA |
| BP | GO:0006396 | RNA processing | IEP | HCCA |
| BP | GO:0016072 | rRNA metabolic process | IEP | HCCA |
| CC | GO:0030684 | preribosome | IEP | HCCA |
| CC | GO:0030688 | preribosome, small subunit precursor | IEP | HCCA |
| BP | GO:0034470 | ncRNA processing | IEP | HCCA |
| BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | HCCA |
| No external refs found! |