Zm00001e008090_P002 (Zm00001e008090)

Aliases : Zm00001e008090

Description : DExH-box ATP-dependent RNA helicase DExH7, chloroplastic OS=Arabidopsis thaliana (sp|f4i9q5|dexh7_arath : 1264.0)

Gene families : OG0000629 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000629_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e008090_P002

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00004p00115360	evm_27.TU.AmTr_v1...	DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Aob_g23619	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aob_g32440	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g33749	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.20G077000.1	Ceric.20G077000	not classified & original description: pacid=50565979...	0.03	OrthoFinder output from all 47 species
Dac_g08746	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g03968	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Len_g08750	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g04976	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Smo177444	No alias	DExH-box ATP-dependent RNA helicase DExH7, chloroplastic...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0016787	hydrolase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	868	999
IPR011709	DEAD-box_helicase_OB_fold	1256	1353
IPR007502	Helicase-assoc_dom	1064	1163
IPR011545	DEAD/DEAH_box_helicase_dom	581	745

External Links

No external refs found!