Zm00001e007759_P002 (NRPD5, ATRPABC24.3,...)


Aliases : NRPD5, ATRPABC24.3, NRPB5, RPB5A, Zm00001e007759

Description : subunit 5 of RNA polymerase


Gene families : OG0003853 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003853_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e007759_P002

Target Alias Description ECC score Gene Family Method Actions
AT5G57980 RPB5C RNA polymerase II fifth largest subunit, C 0.01 OrthoFinder output from all 47 species
Adi_g013577 NRPD5,... component *(NRPE5) of RNA polymerase V complex &... 0.02 OrthoFinder output from all 47 species
Als_g04153 NRPD5,... component *(NRPE5) of RNA polymerase V complex &... 0.03 OrthoFinder output from all 47 species
Cre09.g403219 NRPD5,... RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.01 OrthoFinder output from all 47 species
Dde_g02603 NRPD5,... component *(NRPE5) of RNA polymerase V complex &... 0.02 OrthoFinder output from all 47 species
Lfl_g09793 NRPD5,... component *(NRPE5) of RNA polymerase V complex &... 0.02 OrthoFinder output from all 47 species
Pp3c10_21990V3.1 NRPD5,... Eukaryotic rpb5 RNA polymerase subunit family protein 0.02 OrthoFinder output from all 47 species
Smo228648 NRPD5,... RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 DNA-templated transcription IEA Interproscan
CC GO:0042025 host cell nucleus IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
InterPro domains Description Start Stop
IPR000783 RNA_pol_subH/Rpb5_C 133 205
IPR005571 RNA_pol_Rpb5_N 6 90
No external refs found!