Aliases : NRPD5, ATRPABC24.3, NRPB5, RPB5A, Zm00001e007759
Description : subunit 5 of RNA polymerase
Gene families : OG0003853 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003853_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT5G57980 | RPB5C | RNA polymerase II fifth largest subunit, C | 0.01 | OrthoFinder output from all 47 species | |
Adi_g013577 | NRPD5,... | component *(NRPE5) of RNA polymerase V complex &... | 0.02 | OrthoFinder output from all 47 species | |
Als_g04153 | NRPD5,... | component *(NRPE5) of RNA polymerase V complex &... | 0.03 | OrthoFinder output from all 47 species | |
Cre09.g403219 | NRPD5,... | RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... | 0.01 | OrthoFinder output from all 47 species | |
Dde_g02603 | NRPD5,... | component *(NRPE5) of RNA polymerase V complex &... | 0.02 | OrthoFinder output from all 47 species | |
Lfl_g09793 | NRPD5,... | component *(NRPE5) of RNA polymerase V complex &... | 0.02 | OrthoFinder output from all 47 species | |
Pp3c10_21990V3.1 | NRPD5,... | Eukaryotic rpb5 RNA polymerase subunit family protein | 0.02 | OrthoFinder output from all 47 species | |
Smo228648 | NRPD5,... | RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... | 0.04 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003677 | DNA binding | IEA | Interproscan |
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEA | Interproscan |
BP | GO:0006351 | DNA-templated transcription | IEA | Interproscan |
CC | GO:0042025 | host cell nucleus | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003723 | RNA binding | IEP | HCCA |
MF | GO:0003743 | translation initiation factor activity | IEP | HCCA |
MF | GO:0004843 | cysteine-type deubiquitinase activity | IEP | HCCA |
BP | GO:0006511 | ubiquitin-dependent protein catabolic process | IEP | HCCA |
MF | GO:0008135 | translation factor activity, RNA binding | IEP | HCCA |
MF | GO:0008234 | cysteine-type peptidase activity | IEP | HCCA |
MF | GO:0019783 | ubiquitin-like protein peptidase activity | IEP | HCCA |
MF | GO:0019843 | rRNA binding | IEP | HCCA |
BP | GO:0019941 | modification-dependent protein catabolic process | IEP | HCCA |
CC | GO:0043226 | organelle | IEP | HCCA |
CC | GO:0043229 | intracellular organelle | IEP | HCCA |
BP | GO:0043632 | modification-dependent macromolecule catabolic process | IEP | HCCA |
BP | GO:0044260 | cellular macromolecule metabolic process | IEP | HCCA |
MF | GO:0045182 | translation regulator activity | IEP | HCCA |
MF | GO:0051536 | iron-sulfur cluster binding | IEP | HCCA |
MF | GO:0051540 | metal cluster binding | IEP | HCCA |
BP | GO:0051603 | proteolysis involved in protein catabolic process | IEP | HCCA |
MF | GO:0090079 | translation regulator activity, nucleic acid binding | IEP | HCCA |
MF | GO:0101005 | deubiquitinase activity | IEP | HCCA |
No external refs found! |