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  5. Zm00001e007372_P001

Zm00001e007372_P001 (Zm00001e007372)


Aliases : Zm00001e007372

Description : Pentatricopeptide repeat-containing protein At1g02150 OS=Arabidopsis thaliana (sp|q8lps6|ppr3_arath : 427.0)


Gene families : OG0000613 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000613_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e007372_P001
Cluster HCCA: Cluster_114

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00190720 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g02150... 0.05 OrthoFinder output from all 47 species
AMTR_s00024p00251490 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g02150... 0.05 OrthoFinder output from all 47 species
AMTR_s00135p00094440 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g09450,... 0.02 OrthoFinder output from all 47 species
AT1G02150 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.08 OrthoFinder output from all 47 species
Adi_g114052 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g11231 No alias RNA editing factor *(POCO) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01002065001 No alias Pentatricopeptide repeat-containing protein At4g21705,... 0.04 OrthoFinder output from all 47 species
GSVIVT01018303001 No alias Pentatricopeptide repeat-containing protein At1g02150... 0.1 OrthoFinder output from all 47 species
GSVIVT01031246001 No alias Pentatricopeptide repeat-containing protein At4g01990,... 0.03 OrthoFinder output from all 47 species
GSVIVT01033642001 No alias Pentatricopeptide repeat-containing protein At1g80270,... 0.03 OrthoFinder output from all 47 species
Gb_14576 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.03 OrthoFinder output from all 47 species
Gb_27873 No alias RNA editing factor (POCO) 0.02 OrthoFinder output from all 47 species
LOC_Os02g55310.1 LOC_Os02g55310 Pentatricopeptide repeat-containing protein At5g27460... 0.01 OrthoFinder output from all 47 species
LOC_Os04g46010.1 LOC_Os04g46010 Pentatricopeptide repeat-containing protein At1g02150... 0.2 OrthoFinder output from all 47 species
Len_g02376 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g37557 No alias RNA editing factor *(POCO) & original description: none 0.02 OrthoFinder output from all 47 species
MA_100637g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.02 OrthoFinder output from all 47 species
MA_128872g0020 No alias Pentatricopeptide repeat-containing protein At1g02150... 0.02 OrthoFinder output from all 47 species
MA_170161g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.05 OrthoFinder output from all 47 species
MA_94340g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.02 OrthoFinder output from all 47 species
MA_9997953g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.05 OrthoFinder output from all 47 species
Sam_g51005 No alias RNA editing factor *(POCO) & original description: none 0.02 OrthoFinder output from all 47 species
Smo413483 No alias Pentatricopeptide repeat-containing protein At1g80270,... 0.02 OrthoFinder output from all 47 species
Smo444770 No alias Pentatricopeptide repeat-containing protein At3g15590,... 0.03 OrthoFinder output from all 47 species
Solyc01g079320.4.1 Solyc01g079320 Pentatricopeptide repeat-containing protein At1g02370,... 0.03 OrthoFinder output from all 47 species
Solyc01g081320.4.1 Solyc01g081320 Pentatricopeptide repeat-containing protein At5g27460... 0.03 OrthoFinder output from all 47 species
Solyc01g089870.3.1 Solyc01g089870 Pentatricopeptide repeat-containing protein At1g02150... 0.11 OrthoFinder output from all 47 species
Solyc07g063220.4.1 Solyc07g063220 Pentatricopeptide repeat-containing protein At4g21705,... 0.02 OrthoFinder output from all 47 species
Spa_g11271 No alias RNA editing factor *(POCO) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g14511 No alias RNA ediTing factor *(POCO) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g37476 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Zm00001e036620_P001 Zm00001e036620 Pentatricopeptide repeat-containing protein At1g60770... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0004418 hydroxymethylbilane synthase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
MF GO:0035596 methylthiotransferase activity IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0050497 alkylthioltransferase activity IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 214 260
IPR002885 Pentatricopeptide_repeat 392 420
IPR002885 Pentatricopeptide_repeat 181 210
IPR019734 TPR_repeat 287 312
No external refs found!