Zm00001e006792_P001 (DRD2, NRPE2, NRPD2A,...)

Aliases : DRD2, NRPE2, NRPD2A, NRPD2, DMS2, Zm00001e006792

Description : subunit 2 of Pol IV RNA polymerase. subunit 2 of Pol V RNA polymerase

Gene families : OG0000511 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000511_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e006792_P001

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00068p00180360	EMB1989, RPB2,...	DNA-directed RNA polymerase II subunit 2 OS=Arabidopsis thaliana	0.04	OrthoFinder output from all 47 species
AT3G18090	NRPD2B	nuclear RNA polymerase D2B	0.07	OrthoFinder output from all 47 species
GSVIVT01020543001	EMB1989, RPB2, NRPB2	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.03	OrthoFinder output from all 47 species
GSVIVT01035963001	DRD2, NRPE2,...	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.03	OrthoFinder output from all 47 species
GSVIVT01036596001	NRPC2	DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Gb_05262	NRPC2	subunit 2 of Pol III RNA polymerase	0.02	OrthoFinder output from all 47 species
Gb_30006	EMB1989, RPB2, NRPB2	subunit 2 of Pol II RNA polymerase	0.03	OrthoFinder output from all 47 species
LOC_Os03g28960.1	NRPC2, LOC_Os03g28960	DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
LOC_Os04g54840.1	DRD2, NRPE2,...	subunit 2 of Pol IV RNA polymerase. subunit 2 of Pol V...	0.07	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0016579	protein deubiquitination	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0070646	protein modification by small protein removal	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA
BP	GO:1901564	organonitrogen compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007641	RNA_pol_Rpb2_7	1128	1226
IPR007645	RNA_pol_Rpb2_3	529	590
IPR007646	RNA_pol_Rpb2_4	625	686
IPR007120	DNA-dir_RNAP_su2_dom	756	1126
IPR007642	RNA_pol_Rpb2_2	320	452
IPR007647	RNA_pol_Rpb2_5	701	747
IPR007644	RNA_pol_bsu_protrusion	103	500

External Links

No external refs found!

Zm00001e006792_P001 (DRD2, NRPE2, NRPD2A,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation