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Zm00001e006057_P001 (Zm00001e006057)


Aliases : Zm00001e006057

Description : Homeobox-DDT domain protein RLT3 OS=Arabidopsis thaliana (sp|f4jrf5|rlt3_arath : 704.0)


Gene families : OG0001590 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001590_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e006057_P001
Cluster HCCA: Cluster_673

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00092p00109950 evm_27.TU.AmTr_v1... Homeobox-DDT domain protein RLT3 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT5G44180 No alias Homeodomain-like transcriptional regulator 0.03 OrthoFinder output from all 47 species
Adi_g012033 HB-1 component *(RINGLET/RLT) of ISWI chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Als_g14029 No alias component *(RINGLET/RLT) of ISWI chromatin remodeling... 0.04 OrthoFinder output from all 47 species
Als_g63176 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g09051 HB-1 component *(RINGLET/RLT) of ISWI chromatin remodeling... 0.04 OrthoFinder output from all 47 species
Aspi01Gene48323.t1 HB-1, Aspi01Gene48323 component *(RINGLET/RLT) of ISWI chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Azfi_s0288.g063217 No alias component *(RINGLET/RLT) of ISWI chromatin remodeling... 0.04 OrthoFinder output from all 47 species
Cba_g05343 No alias component *(RINGLET/RLT) of ISWI chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Cba_g11293 No alias component *(RINGLET/RLT) of ISWI chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Ceric.16G048200.1 HB-1, Ceric.16G048200 component *(RINGLET/RLT) of ISWI chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Dac_g05474 HB-1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g00993 No alias component *(RINGLET/RLT) of ISWI chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Ehy_g16445 No alias component *(RINGLET/RLT) of ISWI chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Ehy_g30736 No alias component *(RINGLET/RLT) of ISWI chromatin remodeling... 0.03 OrthoFinder output from all 47 species
GSVIVT01020605001 No alias RNA biosynthesis.transcriptional activation.HB... 0.02 OrthoFinder output from all 47 species
GSVIVT01021113001 HB-1 RNA biosynthesis.transcriptional activation.HB... 0.02 OrthoFinder output from all 47 species
Lfl_g10310 No alias component *(RINGLET/RLT) of ISWI chromatin remodeling... 0.03 OrthoFinder output from all 47 species
MA_10432531g0010 No alias Homeobox-DDT domain protein RLT3 OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
MA_2434g0010 No alias HOX-like transcription factor 0.03 OrthoFinder output from all 47 species
Msp_g14817 No alias component *(RINGLET/RLT) of ISWI chromatin remodeling... 0.05 OrthoFinder output from all 47 species
Msp_g47810 HB-1 component *(RINGLET/RLT) of ISWI chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Ore_g29882 No alias component *(RINGLET/RLT) of ISWI chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Pnu_g33169 HB-1 component *(RINGLET/RLT) of ISWI chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Solyc11g006200.2.1 Solyc11g006200 Homeobox-DDT domain protein RLT3 OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
Tin_g13654 No alias component *(RINGLET/RLT) of ISWI chromaTin remodeling... 0.02 OrthoFinder output from all 47 species
Zm00001e028032_P001 Zm00001e028032 HOX-like transcription factor 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR018501 DDT_dom 384 435
IPR028942 WHIM1_dom 661 691
IPR001356 Homeobox_dom 23 72
IPR028941 WHIM2_dom 779 850
No external refs found!