Zm00001e005355_P001 (Zm00001e005355)

Aliases : Zm00001e005355

Description : DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa subsp. japonica (sp|q84t03|rh27_orysj : 753.0)

Gene families : OG0005389 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005389_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e005355_P001
Cluster	HCCA: Cluster_82

Target	Alias	Description	ECC score	Gene Family Method	Actions
LOC_Os06g34420.1	LOC_Os06g34420	Putative DEAD-box ATP-dependent RNA helicase 51 OS=Oryza...	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
CC	GO:0016020	membrane	IEP	HCCA
MF	GO:0016887	ATP hydrolysis activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR025313	DUF4217	543	601
IPR001650	Helicase_C	401	499
IPR011545	DEAD/DEAH_box_helicase_dom	158	328

External Links

No external refs found!