Zm00001e005290_P004 (Zm00001e005290)

Aliases : Zm00001e005290

Description : no hits & (original description: none)

Gene families : OG0007026 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007026_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e005290_P004

Target	Alias	Description	ECC score	Gene Family Method
AT4G38020	No alias	tRNA/rRNA methyltransferase (SpoU) family protein	0.03	OrthoFinder output from all 47 species
Aev_g14558	No alias	MRM3-type rRNA methyltransferase & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0048.g030631	No alias	MRM3-type rRNA methyltransferase & original description:...	0.02	OrthoFinder output from all 47 species
Cba_g09635	No alias	MRM3-type rRNA methyltransferase & original description: none	0.07	OrthoFinder output from all 47 species
LOC_Os03g48050.1	LOC_Os03g48050	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Mp1g08680.1	No alias	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Nbi_g08392	No alias	MRM3-type rRNA methyltransferase & original description: none	0.04	OrthoFinder output from all 47 species
Solyc11g010900.2.1	Solyc11g010900	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Tin_g31512	No alias	MRM3-type rRNA methyltransferase & original description: none	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008168	methyltransferase activity	None	Extended
MF	GO:0008173	RNA methyltransferase activity	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	HCCA
MF	GO:0003697	single-stranded DNA binding	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
MF	GO:0009982	pseudouridine synthase activity	IEP	HCCA
MF	GO:0016866	intramolecular transferase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001537	SpoU_MeTrfase	203	351

External Links

No external refs found!

Zm00001e005290_P004 (Zm00001e005290)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation