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  5. Zm00001e005199_P002

Zm00001e005199_P002 (PAPS1, Zm00001e005199)


Aliases : PAPS1, Zm00001e005199

Description : poly(A) RNA polymerase


Gene families : OG0000731 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000731_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e005199_P002

Target Alias Description ECC score Gene Family Method Actions
AT2G25850 PAPS2 poly(A) polymerase 2 0.04 OrthoFinder output from all 47 species
Adi_g055927 PAPS1 poly(A) RNA polymerase & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g085047 PAP(IV), nPAP poly(A) RNA polymerase & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g102292 PAP(IV), nPAP poly(A) RNA polymerase & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g102293 PAPS2 poly(A) RNA polymerase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g11878 PAP(IV), nPAP poly(A) RNA polymerase & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene01167.t1 PAP(IV), nPAP,... poly(A) RNA polymerase & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.22G023600.1 PAP(IV), nPAP,... poly(A) RNA polymerase & original description:... 0.04 OrthoFinder output from all 47 species
Dac_g03375 PAP(IV), nPAP poly(A) RNA polymerase & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g33897 PAPS1 poly(A) RNA polymerase & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g13917 PAP(IV), nPAP poly(A) RNA polymerase & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01008352001 PAPS1 RNA processing.RNA 3-end polyadenylation.poly(A) RNA polymerase 0.03 OrthoFinder output from all 47 species
Gb_12958 PAPS1 poly(A) RNA polymerase 0.02 OrthoFinder output from all 47 species
LOC_Os06g21470.1 PAPS1, LOC_Os06g21470 poly(A) RNA polymerase 0.06 OrthoFinder output from all 47 species
LOC_Os06g36360.2 PAP(IV), nPAP,... poly(A) RNA polymerase 0.04 OrthoFinder output from all 47 species
Lfl_g10052 PAP(IV), nPAP poly(A) RNA polymerase & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g15635 PAP(IV), nPAP poly(A) RNA polymerase & original description: none 0.04 OrthoFinder output from all 47 species
MA_136671g0010 PAP(IV), nPAP poly(A) RNA polymerase 0.03 OrthoFinder output from all 47 species
MA_27451g0010 PAPS1 poly(A) RNA polymerase 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0108.g020416 PAP(IV), nPAP poly(A) RNA polymerase & original description: CDS=1-2220 0.06 OrthoFinder output from all 47 species
Sam_g27060 No alias poly(A) RNA polymerase & original description: none 0.02 OrthoFinder output from all 47 species
Smo231918 PAPS1 RNA processing.RNA 3-end polyadenylation.poly(A) RNA polymerase 0.02 OrthoFinder output from all 47 species
Solyc08g066200.3.1 PAP(IV), nPAP,... poly(A) RNA polymerase 0.05 OrthoFinder output from all 47 species
Tin_g13510 PAP(IV), nPAP poly(A) RNA polymerase & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e001484_P002 PAPS3, Zm00001e001484 poly(A) RNA polymerase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0004652 polynucleotide adenylyltransferase activity IEA Interproscan
MF GO:0016779 nucleotidyltransferase activity IEA Interproscan
BP GO:0043631 RNA polyadenylation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006368 transcription elongation by RNA polymerase II IEP HCCA
CC GO:0008023 transcription elongation factor complex IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
CC GO:0016593 Cdc73/Paf1 complex IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR007012 PolA_pol_cen_dom 12 356
IPR002934 Polymerase_NTP_transf_dom 85 140
IPR007010 PolA_pol_RNA-bd_dom 359 418
No external refs found!