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  5. Zm00001e004969_P001

Zm00001e004969_P001 (Zm00001e004969)


Aliases : Zm00001e004969

Description : E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana (sp|q8le94|ring3_arath : 94.0)


Gene families : OG0000856 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000856_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e004969_P001
Cluster HCCA: Cluster_129

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00207050 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
Aev_g24067 No alias E3 ubiquitin ligase *(AIRP1) & original description: none 0.05 OrthoFinder output from all 47 species
Als_g34974 No alias E3 ubiquitin ligase *(AIRP1) & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os10g05230.2 RHB1A, LOC_Os10g05230 Probable E3 ubiquitin-protein ligase RHB1A... 0.03 OrthoFinder output from all 47 species
Len_g00443 No alias E3 ubiquitin ligase *(AIRP1) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g10406 No alias E3 ubiquitin ligase *(AIRP1) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g55528 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0017.g007188 No alias E3 ubiquitin ligase *(AIRP1) & original description: CDS=367-1074 0.02 OrthoFinder output from all 47 species
Solyc01g094840.3.1 RHB1A, Solyc01g094840 Probable E3 ubiquitin-protein ligase RHB1A... 0.04 OrthoFinder output from all 47 species
Spa_g09230 RHB1A not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g00301 No alias E3 ubiquiTin ligase *(AIRP1) & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 153 195
No external refs found!