Zm00001e004933_P001 (RPL10B, Zm00001e004933)

Aliases : RPL10B, Zm00001e004933

Description : component RPL10 of LSU proteome component

Gene families : OG0001847 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001847_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e004933_P001
Cluster	HCCA: Cluster_46

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00072p00080890	RPL10B,...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.07	OrthoFinder output from all 47 species
AMTR_s00077p00151750	RPL10B,...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
AT1G14320	SAC52, RPL10, RPL10A	Ribosomal protein L16p/L10e family protein	0.15	OrthoFinder output from all 47 species
AT1G26910	RPL10B	Ribosomal protein L16p/L10e family protein	0.07	OrthoFinder output from all 47 species
Adi_g019250	RPL10B	component *(uL16) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Aob_g04834	RPL10B	component *(uL16) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aop_g13129	RPL10B	component *(uL16) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Azfi_s0001.g000052	RPL10B	component *(uL16) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Azfi_s0267.g061009	RPL10B	component *(uL16) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Azfi_s1282.g100862	RPL10B	component *(uL16) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Ceric.10G071500.1	RPL10B, Ceric.10G071500	component *(uL16) of large ribosomal-subunit (LSU)...	0.12	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001424.5	RPL10C, SAG24	Protein biosynthesis.cytosolic ribosome.large subunit...	0.1	OrthoFinder output from all 47 species
GSVIVT01001137001	RPL10B	60S ribosomal protein L10 OS=Vitis riparia	0.16	OrthoFinder output from all 47 species
GSVIVT01024537001	RPL10B	Protein biosynthesis.cytosolic ribosome.large subunit...	0.05	OrthoFinder output from all 47 species
Gb_06067	RPL10B	component RPL10 of LSU proteome component	0.07	OrthoFinder output from all 47 species
LOC_Os11g11390.1	RPL10B, LOC_Os11g11390	component RPL10 of LSU proteome component	0.07	OrthoFinder output from all 47 species
Lfl_g29877	RPL10B	component *(uL16) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
MA_17326g0010	SAC52, RPL10, RPL10A	component RPL10 of LSU proteome component	0.09	OrthoFinder output from all 47 species
Mp4g23990.1	RPL10B	component RPL10 of LSU proteome component	0.18	OrthoFinder output from all 47 species
Msp_g21522	RPL10B	component *(uL16) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Msp_g34193	RPL10B	component *(uL16) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Ore_g08472	RPL10B	component *(uL16) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Pir_g10010	RPL10B	component *(uL16) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Pp3c11_4130V3.1	RPL10B, Pp3c11_4130	Ribosomal protein L16p/L10e family protein	0.05	OrthoFinder output from all 47 species
Pp3c2_29600V3.1	RPL10B, Pp3c2_29600	Ribosomal protein L16p/L10e family protein	0.07	OrthoFinder output from all 47 species
Pp3c7_22400V3.1	RPL10B, Pp3c7_22400	Ribosomal protein L16p/L10e family protein	0.04	OrthoFinder output from all 47 species
Ppi_g26211	RPL10B	component *(uL16) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ppi_g62311	RPL10B	component *(uL16) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g08903	No alias	component *(uL16) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Sam_g47361	No alias	component *(uL16) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Smo437527	RPL10B	Protein biosynthesis.cytosolic ribosome.large subunit...	0.02	OrthoFinder output from all 47 species
Solyc06g007520.4.1	RPL10B, Solyc06g007520	component RPL10 of LSU proteome component	0.14	OrthoFinder output from all 47 species
Solyc06g082650.4.1	SAC52, RPL10,...	component RPL10 of LSU proteome component	0.15	OrthoFinder output from all 47 species
Solyc06g082670.3.1	RPL10B, Solyc06g082670	component RPL10 of LSU proteome component	0.12	OrthoFinder output from all 47 species
Spa_g18494	RPL10B	component *(uL16) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Spa_g51059	RPL10C, SAG24	component *(uL16) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Tin_g35026	RPL10B	component *(uL16) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0003924	GTPase activity	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
MF	GO:0016462	pyrophosphatase activity	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	HCCA
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR016180	Ribosomal_L10e/L16	12	166

External Links

No external refs found!

Zm00001e004933_P001 (RPL10B, Zm00001e004933)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation