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  5. Zm00001e004657_P008

Zm00001e004657_P008 (Zm00001e004657)


Aliases : Zm00001e004657

Description : E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis thaliana (sp|q9ffb6|zfp34_arath : 299.0)


Gene families : OG0002193 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002193_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e004657_P008

Target Alias Description ECC score Gene Family Method Actions
AT5G18650 No alias CHY-type/CTCHY-type/RING-type Zinc finger protein 0.02 OrthoFinder output from all 47 species
AT5G22920 No alias CHY-type/CTCHY-type/RING-type Zinc finger protein 0.03 OrthoFinder output from all 47 species
Cba_g14262 No alias E3 ubiquitin ligase *(CHY) & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01031467001 No alias E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
GSVIVT01033674001 No alias E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
LOC_Os03g05270.1 LOC_Os03g05270 E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
LOC_Os03g22680.1 LOC_Os03g22680 E3 ubiquitin-protein ligase SRFP1 OS=Oryza sativa subsp.... 0.03 OrthoFinder output from all 47 species
MA_10429565g0010 No alias Probable E3 ubiquitin-protein ligase RZFP34 OS=Oryza... 0.02 OrthoFinder output from all 47 species
MA_10436725g0010 No alias E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
MA_126866g0010 No alias Probable E3 ubiquitin-protein ligase RZFP34 OS=Oryza... 0.03 OrthoFinder output from all 47 species
Nbi_g02904 No alias E3 ubiquitin ligase *(CHY) & original description: none 0.07 OrthoFinder output from all 47 species
Pir_g11167 No alias E3 ubiquitin ligase *(CHY) & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0008037 cell recognition IEP HCCA
BP GO:0048544 recognition of pollen IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 180 223
IPR008913 Znf_CHY 10 72
IPR039512 RCHY1_zinc-ribbon 228 286
No external refs found!