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  5. Zm00001e004655_P002

Zm00001e004655_P002 (emb2444, Zm00001e004655)


Aliases : emb2444, Zm00001e004655

Description : component SF3B4 of splicing factor 3B complex


Gene families : OG0005757 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005757_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e004655_P002
Cluster HCCA: Cluster_137

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00059p00117370 emb2444,... RNA processing.RNA splicing.U2-type-intron-specific... 0.03 OrthoFinder output from all 47 species
Adi_g058079 emb2444 component *(SF3B4) of splicing factor 3B complex &... 0.02 OrthoFinder output from all 47 species
Azfi_s0001.g000219 emb2444 component *(SF3B4) of splicing factor 3B complex &... 0.04 OrthoFinder output from all 47 species
Ceric.05G023600.1 emb2444, Ceric.05G023600 component *(SF3B4) of splicing factor 3B complex &... 0.05 OrthoFinder output from all 47 species
Ceric.25G045000.1 emb2444, Ceric.25G045000 component *(SF3B4) of splicing factor 3B complex &... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001029.19 emb2444 RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder output from all 47 species
Cre06.g254800 emb2444 RNA processing.RNA splicing.U2-type-intron-specific... 0.04 OrthoFinder output from all 47 species
Dcu_g01446 emb2444 component *(SF3B4) of splicing factor 3B complex &... 0.04 OrthoFinder output from all 47 species
GSVIVT01018991001 emb2444 RNA processing.RNA splicing.U2-type-intron-specific... 0.04 OrthoFinder output from all 47 species
Len_g04684 emb2444 component *(SF3B4) of splicing factor 3B complex &... 0.04 OrthoFinder output from all 47 species
MA_10046g0010 emb2444 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp1g06640.1 emb2444 component SF3B4 of splicing factor 3B complex 0.02 OrthoFinder output from all 47 species
Pir_g48769 emb2444 component *(SF3B4) of splicing factor 3B complex &... 0.04 OrthoFinder output from all 47 species
Sam_g12060 No alias component *(SF3B4) of splicing factor 3B complex &... 0.03 OrthoFinder output from all 47 species
Solyc03g118800.3.1 emb2444, Solyc03g118800 component SF3B4 of splicing factor 3B complex 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005669 transcription factor TFIID complex IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 114 184
IPR000504 RRM_dom 28 97
No external refs found!