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  5. Zm00001e004570_P001

Zm00001e004570_P001 (LSH4, Zm00001e004570)


Aliases : LSH4, Zm00001e004570

Description : Protein G1-like4 OS=Oryza sativa subsp. indica (sp|a2xvi8|g1l4_orysi : 199.0)


Gene families : OG0001118 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001118_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e004570_P001
Cluster HCCA: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00067p00052610 LSH6,... Protein G1-like2 OS=Oryza sativa subsp. japonica 0.05 OrthoFinder output from all 47 species
AMTR_s00153p00047660 evm_27.TU.AmTr_v1... Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6... 0.04 OrthoFinder output from all 47 species
AMTR_s00155p00022580 LSH6,... Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... 0.03 OrthoFinder output from all 47 species
AT1G07090 LSH6 Protein of unknown function (DUF640) 0.03 OrthoFinder output from all 47 species
AT2G42610 LSH10 Protein of unknown function (DUF640) 0.03 OrthoFinder output from all 47 species
AT3G04510 LSH2 Protein of unknown function (DUF640) 0.04 OrthoFinder output from all 47 species
AT3G23290 LSH4 No description available 0.06 OrthoFinder output from all 47 species
AT4G18610 LSH9 Protein of unknown function (DUF640) 0.03 OrthoFinder output from all 47 species
AT5G28490 LSH1 Protein of unknown function (DUF640) 0.05 OrthoFinder output from all 47 species
Adi_g018931 LSH4 plant-specific ALOG-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Adi_g024283 LSH4 plant-specific ALOG-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Adi_g024284 LSH4 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ala_g01257 LSH4 plant-specific ALOG-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Als_g08697 LSH4 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Als_g17249 LSH4 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Aop_g21143 LSH6 plant-specific ALOG-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Aspi01Gene32958.t1 LSH4, Aspi01Gene32958 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene66763.t1 LSH4, Aspi01Gene66763 plant-specific ALOG-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0092.g043036 LSH4 plant-specific ALOG-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Azfi_s0093.g043261 LSH4 plant-specific ALOG-type transcription factor & original... 0.05 OrthoFinder output from all 47 species
Cba_g31587 LSH4 plant-specific ALOG-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ceric.02G086500.1 LSH4, Ceric.02G086500 plant-specific ALOG-type transcription factor & original... 0.05 OrthoFinder output from all 47 species
Ceric.14G090800.1 LSH6, Ceric.14G090800 plant-specific ALOG-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Ceric.18G075200.1 LSH4, Ceric.18G075200 plant-specific ALOG-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Ceric.22G071900.1 LSH6, Ceric.22G071900 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.29G008000.1 LSH4, Ceric.29G008000 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Dac_g18837 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g44523 LSH4 plant-specific ALOG-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Dde_g11211 LSH4 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Dde_g22007 LSH4 plant-specific ALOG-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01020708001 LSH10 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10... 0.03 OrthoFinder output from all 47 species
GSVIVT01023521001 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4... 0.09 OrthoFinder output from all 47 species
GSVIVT01027827001 LSH10 No description available 0.05 OrthoFinder output from all 47 species
GSVIVT01028348001 LSH3 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... 0.07 OrthoFinder output from all 47 species
Gb_15426 LSH4 Protein G1-like5 OS=Oryza sativa subsp. japonica... 0.06 OrthoFinder output from all 47 species
Gb_36840 LSH4 Protein G1-like6 OS=Oryza sativa subsp. indica... 0.04 OrthoFinder output from all 47 species
Gb_39186 No alias Protein G1-like6 OS=Oryza sativa subsp. indica... 0.04 OrthoFinder output from all 47 species
LOC_Os01g61310.1 LSH6, LOC_Os01g61310 Protein G1-like7 OS=Oryza sativa subsp. indica... 0.03 OrthoFinder output from all 47 species
LOC_Os02g07030.1 LSH4, LOC_Os02g07030 Protein G1-like1 OS=Oryza sativa subsp. japonica... 0.09 OrthoFinder output from all 47 species
LOC_Os02g41460.1 LSH4, LOC_Os02g41460 Protein G1-like3 OS=Oryza sativa subsp. indica... 0.06 OrthoFinder output from all 47 species
LOC_Os02g56610.1 LSH4, LOC_Os02g56610 Protein G1-like6 OS=Oryza sativa subsp. indica... 0.03 OrthoFinder output from all 47 species
LOC_Os04g43580.2 LSH4, LOC_Os04g43580 Protein G1-like3 OS=Oryza sativa subsp. indica... 0.02 OrthoFinder output from all 47 species
LOC_Os05g39500.1 LSH6, LOC_Os05g39500 Protein G1-like8 OS=Oryza sativa subsp. japonica... 0.03 OrthoFinder output from all 47 species
LOC_Os07g04670.1 LSH6, LOC_Os07g04670 Protein G1 OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species
LOC_Os10g33780.1 LSH4, LOC_Os10g33780 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... 0.04 OrthoFinder output from all 47 species
Len_g03807 LSH1 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
MA_12926g0010 LSH4 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... 0.03 OrthoFinder output from all 47 species
Msp_g25188 LSH6 plant-specific ALOG-type transcription factor & original... 0.05 OrthoFinder output from all 47 species
Nbi_g02008 LSH4 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Pir_g10661 LSH4 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Pir_g20213 LSH4 plant-specific ALOG-type transcription factor & original... 0.05 OrthoFinder output from all 47 species
Pnu_g12268 LSH6 plant-specific ALOG-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ppi_g32132 LSH4 plant-specific ALOG-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000386 LSH4 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0149.g023275 LSH4 plant-specific ALOG-type transcription factor & original... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0158.g023794 LSH4 plant-specific ALOG-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Smo36560 No alias Protein G1-like4 OS=Oryza sativa subsp. indica 0.03 OrthoFinder output from all 47 species
Solyc02g069510.1.1 LSH4, Solyc02g069510 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5... 0.03 OrthoFinder output from all 47 species
Solyc05g055020.4.1 LSH1, Solyc05g055020 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1... 0.09 OrthoFinder output from all 47 species
Solyc06g083860.2.1 LSH3, Solyc06g083860 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... 0.03 OrthoFinder output from all 47 species
Solyc07g150147.1.1 LSH10, Solyc07g150147 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10... 0.02 OrthoFinder output from all 47 species
Solyc09g025280.1.1 LSH4, Solyc09g025280 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... 0.05 OrthoFinder output from all 47 species
Solyc10g007310.1.1 LSH10, Solyc10g007310 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10... 0.05 OrthoFinder output from all 47 species
Solyc10g008000.1.1 LSH10, Solyc10g008000 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10... 0.04 OrthoFinder output from all 47 species
Spa_g04648 LSH4 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Spa_g07735 LSH4 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Spa_g22416 LSH4 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Spa_g22798 LSH4 plant-specific ALOG-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Spa_g28138 LSH4 plant-specific ALOG-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Spa_g47479 LSH4 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Zm00001e013711_P001 LSH4, Zm00001e013711 Protein G1-like2 OS=Oryza sativa subsp. indica... 0.03 OrthoFinder output from all 47 species
Zm00001e016177_P002 LSH4, Zm00001e016177 Protein G1-like6 OS=Oryza sativa subsp. indica... 0.02 OrthoFinder output from all 47 species
Zm00001e023639_P001 LSH4, Zm00001e023639 Protein G1-like6 OS=Oryza sativa subsp. indica... 0.05 OrthoFinder output from all 47 species
Zm00001e027283_P001 LSH6, Zm00001e027283 Protein G1-like8 OS=Oryza sativa subsp. japonica... 0.01 OrthoFinder output from all 47 species
Zm00001e032784_P001 LSH6, Zm00001e032784 Protein G1 OS=Oryza sativa subsp. japonica... 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005516 calmodulin binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR006936 ALOG_dom 43 159
No external refs found!