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  5. Zm00001e003598_P001

Zm00001e003598_P001 (PUM5, APUM5, Zm00001e003598)


Aliases : PUM5, APUM5, Zm00001e003598

Description : Pumilio homolog 5 OS=Arabidopsis thaliana (sp|q9ljx4|pum5_arath : 609.0)


Gene families : OG0000583 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000583_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e003598_P001

Target Alias Description ECC score Gene Family Method Actions
Adi_g011593 PUM1, APUM1 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aob_g28239 PUM1, APUM1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g09055 APUM4, PUM4 not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0031011 Ino80 complex IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0070603 SWI/SNF superfamily-type complex IEP HCCA
CC GO:0097346 INO80-type complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1904949 ATPase complex IEP HCCA
InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 780 809
IPR001313 Pumilio_RNA-bd_rpt 969 1000
IPR001313 Pumilio_RNA-bd_rpt 925 957
IPR001313 Pumilio_RNA-bd_rpt 708 740
IPR001313 Pumilio_RNA-bd_rpt 744 776
IPR001313 Pumilio_RNA-bd_rpt 817 842
IPR001313 Pumilio_RNA-bd_rpt 852 879
No external refs found!