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  5. Zm00001e003593_P002

Zm00001e003593_P002 (UBP1B, Zm00001e003593)


Aliases : UBP1B, Zm00001e003593

Description : mRNA-binding regulatory factor (UBP1)


Gene families : OG0002014 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002014_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e003593_P002

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00204100 evm_27.TU.AmTr_v1... Oligouridylate-binding protein 1 OS=Nicotiana plumbaginifolia 0.02 OrthoFinder output from all 47 species
Aev_g21611 UBP1B stress granule assembly factor *(UBP1) & original... 0.03 OrthoFinder output from all 47 species
Ehy_g22043 UBP1B stress granule assembly factor *(UBP1) & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01015040001 UBP1B Oligouridylate-binding protein 1 OS=Nicotiana plumbaginifolia 0.03 OrthoFinder output from all 47 species
GSVIVT01016720001 UBP1B Oligouridylate-binding protein 1B OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01035575001 UBP1B Oligouridylate-binding protein 1B OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Ore_g03213 UBP1B stress granule assembly factor *(UBP1) & original... 0.02 OrthoFinder output from all 47 species
Sam_g28502 No alias stress granule assembly factor *(UBP1) & original... 0.02 OrthoFinder output from all 47 species
Zm00001e021159_P001 UBP1B, Zm00001e021159 mRNA-binding regulatory factor (UBP1) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 73 139
IPR000504 RRM_dom 158 228
IPR000504 RRM_dom 282 348
No external refs found!