LOC_Os03g22900 (Os03g0352450, Os03g0352500)


Aliases : Os03g0352450, Os03g0352500

Description : 28.99 DNA.unspecified Encodes the Arabidopsis INO80 ortholog of the SWI/SNF ATPase family. Functions as a positive regulator of DNA homologous recombination (HR). In INO80 mutants, the HR frequency is reduced to 15% of that in the wild-type. Mutation in INO80 does not affect sensitivity to genotoxic agents and efficiency of T-DNA integration. INO80 was also shown to regulate a subset of the Arabidopsis transcriptome. INO80 ortholog (INO80)


Gene families : OG_01_0007037 (Gene family) Phylogenetic Tree(s): OG0007037_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): LOC_Os03g22900
Cluster HCCA cluster: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
AT3G57300 ATINO80, INO80 INO80 ortholog 0.03 Gene family
Cpa|evm.model.tig00021501.9 No alias 28.99 DNA.unspecified Encodes the Arabidopsis INO80... 0.02 Gene family
GSVIVT01033231001 No alias 28.99 DNA.unspecified Encodes the Arabidopsis INO80... 0.12 Gene family
MA_3312g0010 No alias 28.99 DNA.unspecified Encodes the Arabidopsis INO80... 0.05 Gene family
Smo444050 PACid_15413673 28.99 DNA.unspecified Encodes the Arabidopsis INO80... 0.1 Gene family
Solyc04g016370.3.1 Solyc04g016370.3 28.99 DNA.unspecified Encodes the Arabidopsis INO80... 0.11 Gene family
Zm00001d029180 GRMZM2G469162 28.99 DNA.unspecified Encodes the Arabidopsis INO80... 0.19 Gene family
Zm00001d047471 GRMZM2G007922,... 28.99 DNA.unspecified Encodes the Arabidopsis INO80... 0.15 Gene family

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001650 Helicase_C 1143 1252
IPR020838 DBINO 343 472
IPR000330 SNF2_N 582 637
IPR000330 SNF2_N 642 823
No external refs found!