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Aliases : Zm00001e003211
Description : no hits & (original description: none)
Gene families : OG0005210 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005210_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Zm00001e003211_P001 | |
| Cluster | HCCA: Cluster_71 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT2G18900 | No alias | Transducin/WD40 repeat-like superfamily protein | 0.14 | OrthoFinder output from all 47 species | |
| Adi_g085575 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g12652 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g07577 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Azfi_s0026.g023316 | No alias | not classified & original description: CDS=130-2748 | 0.05 | OrthoFinder output from all 47 species | |
| Ceric.03G099700.1 | Ceric.03G099700 | not classified & original description: pacid=50571866... | 0.06 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00020554.131 | No alias | No description available | 0.07 | OrthoFinder output from all 47 species | |
| Cre04.g215350 | No alias | No description available | 0.12 | OrthoFinder output from all 47 species | |
| Ehy_g14899 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01030738001 | No alias | No description available | 0.14 | OrthoFinder output from all 47 species | |
| LOC_Os12g41620.1 | LOC_Os12g41620 | no hits & (original description: none) | 0.18 | OrthoFinder output from all 47 species | |
| Len_g01894 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g04918 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| MA_10428181g0010 | No alias | no hits & (original description: none) | 0.06 | OrthoFinder output from all 47 species | |
| MA_40164g0010 | No alias | no hits & (original description: none) | 0.04 | OrthoFinder output from all 47 species | |
| MA_9860436g0010 | No alias | no hits & (original description: none) | 0.04 | OrthoFinder output from all 47 species | |
| Mp7g09630.1 | No alias | no hits & (original description: none) | 0.15 | OrthoFinder output from all 47 species | |
| Msp_g14500 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0001.g000015 | No alias | not classified & original description: CDS=5-2488 | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g27142 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Smo166499 | No alias | No description available | 0.06 | OrthoFinder output from all 47 species | |
| Solyc07g066410.4.1 | Solyc07g066410 | no hits & (original description: none) | 0.17 | OrthoFinder output from all 47 species | |
| Spa_g25780 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Tin_g05636 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | HCCA |
| BP | GO:0000462 | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | IEP | HCCA |
| BP | GO:0001522 | pseudouridine synthesis | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0004518 | nuclease activity | IEP | HCCA |
| MF | GO:0004519 | endonuclease activity | IEP | HCCA |
| MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | HCCA |
| MF | GO:0005524 | ATP binding | IEP | HCCA |
| BP | GO:0006082 | organic acid metabolic process | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006364 | rRNA processing | IEP | HCCA |
| BP | GO:0006396 | RNA processing | IEP | HCCA |
| BP | GO:0006399 | tRNA metabolic process | IEP | HCCA |
| BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | HCCA |
| BP | GO:0006520 | amino acid metabolic process | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0009451 | RNA modification | IEP | HCCA |
| MF | GO:0009982 | pseudouridine synthase activity | IEP | HCCA |
| BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
| BP | GO:0016072 | rRNA metabolic process | IEP | HCCA |
| MF | GO:0016866 | intramolecular transferase activity | IEP | HCCA |
| MF | GO:0016874 | ligase activity | IEP | HCCA |
| MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | HCCA |
| MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
| BP | GO:0019752 | carboxylic acid metabolic process | IEP | HCCA |
| BP | GO:0030490 | maturation of SSU-rRNA | IEP | HCCA |
| MF | GO:0030515 | snoRNA binding | IEP | HCCA |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
| MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | HCCA |
| BP | GO:0034470 | ncRNA processing | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
| MF | GO:0036094 | small molecule binding | IEP | HCCA |
| BP | GO:0043038 | amino acid activation | IEP | HCCA |
| BP | GO:0043039 | tRNA aminoacylation | IEP | HCCA |
| MF | GO:0043167 | ion binding | IEP | HCCA |
| MF | GO:0043168 | anion binding | IEP | HCCA |
| BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
| BP | GO:0043436 | oxoacid metabolic process | IEP | HCCA |
| BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
| BP | GO:0044238 | primary metabolic process | IEP | HCCA |
| BP | GO:0044281 | small molecule metabolic process | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| CC | GO:0061695 | transferase complex, transferring phosphorus-containing groups | IEP | HCCA |
| BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| CC | GO:0090730 | Las1 complex | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | HCCA |
| MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | HCCA |
| MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| CC | GO:1902555 | endoribonuclease complex | IEP | HCCA |
| CC | GO:1902911 | protein kinase complex | IEP | HCCA |
| CC | GO:1905348 | endonuclease complex | IEP | HCCA |
| CC | GO:1905354 | exoribonuclease complex | IEP | HCCA |
| CC | GO:1990234 | transferase complex | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001680 | WD40_repeat | 272 | 303 |
| No external refs found! |